Apic012954.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- -
- Assembly
- GCA_946863875.1
- Location
- OX333074.1:38871448-38882208[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 7e-05 0.0091 17.1 3.0 1 23 162 184 162 184 0.96 2 23 4.2e-06 0.00055 20.9 0.2 1 23 190 213 190 213 0.96 3 23 7.7e-06 0.001 20.1 1.5 1 23 247 269 247 269 0.96 4 23 0.00022 0.029 15.5 4.6 1 23 275 297 275 297 0.97 5 23 0.00038 0.05 14.8 5.4 1 23 303 325 303 325 0.97 6 23 8.2e-05 0.011 16.9 0.3 1 21 331 351 331 352 0.94 7 23 0.0018 0.24 12.6 2.0 3 23 381 402 380 402 0.97 8 23 1.9 2.5e+02 3.1 0.7 1 15 407 421 407 430 0.82 9 23 1.3 1.8e+02 3.6 1.8 1 23 497 520 497 520 0.89 10 23 0.38 50 5.3 0.4 1 23 526 549 526 549 0.91 11 23 7.8e-05 0.01 16.9 0.1 1 23 578 601 578 601 0.97 12 23 0.00018 0.023 15.8 1.8 1 23 607 629 607 629 0.98 13 23 5.5e-06 0.00072 20.6 4.6 1 23 636 658 636 658 0.99 14 23 0.00034 0.045 14.9 0.7 1 23 664 686 664 686 0.95 15 23 4.9e-05 0.0065 17.6 1.4 1 23 692 714 692 714 0.97 16 23 0.037 4.8 8.5 3.5 1 23 720 743 720 744 0.95 17 23 2.4e-05 0.0032 18.5 1.3 1 23 860 882 860 882 0.98 18 23 0.00097 0.13 13.5 6.5 1 23 888 911 888 911 0.97 19 23 0.0012 0.15 13.2 3.5 1 23 917 940 917 940 0.97 20 23 8.6e-07 0.00011 23.1 0.7 1 23 946 968 946 968 0.98 21 23 0.0025 0.33 12.2 2.2 1 23 974 996 974 996 0.96 22 23 1.3e-05 0.0017 19.4 4.3 1 23 1002 1024 1002 1024 0.98 23 23 2.1e-05 0.0028 18.7 1.7 1 23 1030 1053 1030 1053 0.98
Sequence Information
- Coding Sequence
- ATGGCAACAAAATCTGTGAAAACGACCGAAAGTGAGAAAGAATCTTCATTGACACGAAAAATAACTATAAATACAAATGCGTTGGAGAAAAATTTGTTAGAAACTCGCAAAATTGCTATCAACGAAAATACTCTAGCAAAATCTGTGAAACCGATTGCCAGCGAGAAAAATTCCCTACAGACACAACAAGTCGTAATAAACGAAAAGACGATGAAAAAAAATTTGGCTGAAACTCGAAGAATTGTAAGCGGATATACAATAGCAAAATTGGTAAAAATAATTGGGAACGAGGAAAAGCCTTCAAAGACTGGAAAAATAGAGATAAGCAGCGTAACGACGATGAATCGTGTAAAAACGATAACGAGGGAGGAAAATTCGTCAAAAAAACAAAATATCTCTTCGAAAAGACGCAACGGTTCTAAATTTGACTCGCATCGCGACGAATTAAGACGTTCCAAAATAATCGTCGATAACGCGACTCACTACAAGTGCCGAGAATGCCAAAAAAAATTCTCAACGGCTTACAATTTTATCACACATTTTACGATTCACAGTGGTGAAAAGTTATTTGCGTGTACAGTCTGTCCTAAAAAATTTCGTTCCGCTTCTGTTCTCAATCGTCACGTGAGGGTCGTTCATGATGGAAAAAAAAATTTTCCATGTGGTCTTTGTTCGCGTCTTTTGGGCACAAAAGTAGCGCGCGATGAGCATCGCAGAATTCACACTGGGGAACGTCCTCACGTTTGCGATATCTGCGGCAAAGCATTCAAGCAAAGAGCATCGCTTTACGTCCACAAGCGTTTTCACCGTACAGATTTTTCTCACGAGTGTACCATTTGCCATCGTGCTTTTTATCGCAAGCAAGATTACAAAAAACACGTGTTGATTCACACAGGTGAAAAGCCACACTCTTGTCGCATATGTGACAAACGTTTTCGCACTATTGGCTGTCTCAGTCGTCACGTAAAAACTCATGATAGTGCCAAAAATTACAATTGCGATTATTGCGGTATGGCATTTGCTCAAAAACGTTATCTGAAGGTACATGCGAAAAGGTCGCCGGAACAATTGCACGAAGAGACAGAGAGCGTCCGCGAAGATGAGATATTGATATACGAGGACAATGTGAAGAATGTCTTTTGCGAAAAATGTAATTTTCGTTTTTTTCACATATCGGAGCTGGTCGAACACATGAGAAGTATTCACGACGATCAAGTGCATCATTGTCAGCACTGCGACCTAGTTTATCGCGGTTCCGACGAAATTTTTCTCCAACACGTGAGGAATCACGAATCCGGAACTGAAATGGGAGACAATAATGGAGATGATACGTCGAACGCGGACGAGACGAGCTTCGAGGATTATTCCTCGGTGAATAATGATAATGAAATGCTCGAGTCTTCGACTTTTCGGAATAATCCATCGGAGACTCAAGAAGAGAGAAGAGTGATCGAGAGAGCTTCTGCAAGCGGGGCGCAAGGTGTCTCGTATAAGTGCCAAATTTGCGAATGTCTCATATCGAGTTCCAGGCTTCAATTTCTTCGACATATACGGGCTCACCGTGAATACGGTCATTACAGATGTGATTTGTGCGATGAATACTTTTTAGTGCCATTCTTGCTGAATGAGCATAAAAATGAGTTTCATCCATCCATCGATAATTCCAAAAACATTAAATATCACCCTGAAGCGGTGATCAAAGATTCTCAGACTATTTCCAACGCACGTTCCTACATGTGCGAATTTTGCGGCATGACTTATCCATCGATAACGAATCTTCGTGCTCATCAGCAGATTGCTCACGCTCATCTGAAATTGTACATGTGCGATTTTTGCGAGCGCAATTACACGACGGAATCGGCACTGGCCAATCATCATCGATCGCACATTCGTGAACAAGGTCACTATACCTGTGAATATTGCGACAAAAAATTTCGCACATCCAACTCGCTGCATCTTCATCGACGTATACACGAAAATCAAAAACCTCACATTTGCACGAAATGCGAGAAAAGGTTCGCCGCGAAGGAGGATTTGCGCGATCATATCGCCAATCACGAGAAAAATCGTACATTCGTCTGTGAAACTTGTGGCAAAAATTTTGTACTAAAACGGAATCTGCTCAAGCACGTGCACGTTCATAACAACGACGAGACTTTCGTATGCAAATTTTGCCCCTCCATCAAATTTCGGCAGAAGAGATACTTGAGAGTACACACGCAGATTCATCATCCCGACGAGTTACATGACTATATTCCCTCGGATACTCAAAGCGTCGATCGAACCGATTTTTCAAGCAAGAAGGAAGAAAAGACTGAACCCATCGACAGGATTAACGTTGAATATCCTGAGGAAGCCTTGAAAGTCGTAAAATCCGAAGGAAGCAAAGATAATCTCGGAATTCTTCGTGCAAGGAAACGTCGTAGAGTCAAATCCGACAAAGGAAAGAACCTGCAGAAAATTTCGCATCTGGCGAATGAGTCCGAGGTTCCGGTTATACCGGAAACCCAAACCCAAACCGAAGACGTTCCGGAAGTGGCAAAGTCAAAGAGAAAAAAACGTCTTTCCGACGGTCCGTATATTTGTGATTTTTGCGGCAAGCAATTTCGTTTGCGCGACAGTTTCACTTCCCATTTGAGAATCCACATGGGAGAAAAGCAATTTACCTGCCACATATGCGGCAAACAATTCATTCAGGCTGGCTGTTTGTATTATCATTTACGACACTTTCACGGTGGTGTAAAAAATCATACATGCGACATTTGCGGTCATTCTTTTGCGATGAAAACGACAATGGAGGATCATCGTCGTTCTCGACATACCGGCGAACGTCCATACATTTGTGATACTTGCGGCAAAACTTTCGCTAGCAAATCCTCATTGTACATACATAGAAAAATTCATACAGAATCGTATCCCCACGAGTGCAATTATTGTAAAAAATCATTCAGATGGAAGCAACAACTGATCGGACATTTGACGATCCATACGGGCGAGAAAAAATATGCTTGTGACTTTTGCGGCAAAGCCTTTGGTGTGAAACATCATCTTACGAGGCACAAACGCACTCACGATACGGAAAAACTTTACACGTGCAATAAATGCGGCACGAGTTTTGGACAAAAAAGATATCTCGCTAGTCACGAGAGATCTAAACACAAATGA
- Protein Sequence
- MATKSVKTTESEKESSLTRKITINTNALEKNLLETRKIAINENTLAKSVKPIASEKNSLQTQQVVINEKTMKKNLAETRRIVSGYTIAKLVKIIGNEEKPSKTGKIEISSVTTMNRVKTITREENSSKKQNISSKRRNGSKFDSHRDELRRSKIIVDNATHYKCRECQKKFSTAYNFITHFTIHSGEKLFACTVCPKKFRSASVLNRHVRVVHDGKKNFPCGLCSRLLGTKVARDEHRRIHTGERPHVCDICGKAFKQRASLYVHKRFHRTDFSHECTICHRAFYRKQDYKKHVLIHTGEKPHSCRICDKRFRTIGCLSRHVKTHDSAKNYNCDYCGMAFAQKRYLKVHAKRSPEQLHEETESVREDEILIYEDNVKNVFCEKCNFRFFHISELVEHMRSIHDDQVHHCQHCDLVYRGSDEIFLQHVRNHESGTEMGDNNGDDTSNADETSFEDYSSVNNDNEMLESSTFRNNPSETQEERRVIERASASGAQGVSYKCQICECLISSSRLQFLRHIRAHREYGHYRCDLCDEYFLVPFLLNEHKNEFHPSIDNSKNIKYHPEAVIKDSQTISNARSYMCEFCGMTYPSITNLRAHQQIAHAHLKLYMCDFCERNYTTESALANHHRSHIREQGHYTCEYCDKKFRTSNSLHLHRRIHENQKPHICTKCEKRFAAKEDLRDHIANHEKNRTFVCETCGKNFVLKRNLLKHVHVHNNDETFVCKFCPSIKFRQKRYLRVHTQIHHPDELHDYIPSDTQSVDRTDFSSKKEEKTEPIDRINVEYPEEALKVVKSEGSKDNLGILRARKRRRVKSDKGKNLQKISHLANESEVPVIPETQTQTEDVPEVAKSKRKKRLSDGPYICDFCGKQFRLRDSFTSHLRIHMGEKQFTCHICGKQFIQAGCLYYHLRHFHGGVKNHTCDICGHSFAMKTTMEDHRRSRHTGERPYICDTCGKTFASKSSLYIHRKIHTESYPHECNYCKKSFRWKQQLIGHLTIHTGEKKYACDFCGKAFGVKHHLTRHKRTHDTEKLYTCNKCGTSFGQKRYLASHERSKHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -