Apic001447.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- -
- Assembly
- GCA_946863875.1
- Location
- OX333071.1:22623681-22652716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.9e-05 0.012 16.8 1.4 1 23 467 489 467 489 0.96 2 17 1.8e-05 0.0023 19.0 1.9 1 20 495 514 495 517 0.94 3 17 1.6e-05 0.0021 19.1 0.8 1 23 523 545 523 545 0.98 4 17 7.2e-05 0.0094 17.0 4.4 1 21 551 571 551 573 0.95 5 17 2.2e-05 0.0029 18.6 4.6 1 23 579 601 579 601 0.99 6 17 8.4e-05 0.011 16.8 5.7 1 23 607 629 607 629 0.97 7 17 8.5e-06 0.0011 20.0 7.1 1 23 635 657 635 657 0.97 8 17 8.2e-08 1.1e-05 26.3 2.7 1 23 663 685 663 685 0.98 9 17 6.1e-05 0.008 17.3 6.7 1 23 691 713 691 713 0.97 10 17 5e-07 6.6e-05 23.8 2.9 1 23 719 741 719 741 0.98 11 17 7.5e-06 0.00098 20.1 7.8 1 23 747 769 747 769 0.98 12 17 2.4e-05 0.0031 18.6 9.1 1 23 775 797 775 797 0.98 13 17 3.1e-05 0.004 18.2 7.5 1 23 803 825 803 825 0.98 14 17 0.00058 0.077 14.2 8.9 1 21 831 851 831 853 0.94 15 17 1.1e-05 0.0015 19.6 0.4 1 23 859 881 859 881 0.98 16 17 0.027 3.5 8.9 4.5 1 23 891 913 891 913 0.98 17 17 4.4e-07 5.7e-05 24.0 1.3 1 23 919 941 919 941 0.97
Sequence Information
- Coding Sequence
- ATGAATAGCGAACAGCATGCATTGCCAGACACGACTCAGGCGCAGCAAGAGGCAAATTTGGCAAATGCATCGTCTTCGAGTCAAGGACAATTAGGAAGCTCGCAGCAGTCTCCTTCCTCGGATCAACGCGTAGGTACGGCGGTAGCATTAGCGTCGGTAGCCAAATATTGGGTTCTTACGAATCTATTTCCCGGATCGATACCCCAGGTTTCGCTCTATCATACGCAACAAAACTCCTCGACTTCGCCTCGTAGCGCAGCCATCGGCGATATACACGTACAGACTAAGGACGGCGTTGCTAACGCTTCGCTTTCTCAGGAAATGGCAATGACGCCGGTTACTCAACATCAGACAAATAATACAGCGCATCAGCATCATCAGAATACCATTAACGTCGTTGCGGGCAGCAACAATCCCGGCAACATTGTTCATGGCTCTTTGCAAACGAGCTCGCAGATTCCAGTCTCTCTGCCGGGCCTGAATCTGGATGGGACTCATATCCAAGCGAGTCActtgcaggctgctcatGCACAAATgcagcaacagatgcaatcgcaacagttacatcagcaacaacagcagcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcagcagcagcaacaacagcagcaacaacagcagcagcaacaacaacaacaacaacaacaacaacagcagcaacaacaggcgcaccatcagatgcaaagtcatcagaatcagcagaacaatggtcaaacttcgcagaatccaaatgctcaacgtgacgagaacaaggtcaaggacgaaggtggcagctgcaccacagaacggtgcagcgacaatcaggtacactgtcaggtacagtgcgatctccagttgcaacagccacaggatttgcaacagagcatgatgcaacagcaacagatagtcagtatagctggaaataccagcaacgataatccgaacaattcgacgaagacggaaaaGGACAAGGAATTGCGTCAGCTAAACATGACACAATTTCAAGTGCCGGATTTAAAGCCGGGTGGTCACATGATGGACGTGAGAACGGCTGACGGCTCGGTGGTGAAGATAAGCGCCGGGAACGAACAAGATCTCGCCAAGACCCTTGGCGTCGAAATGGTGCAAAATATGTACAAGGTCAACGTCGAAGATATAAATCAATTGCTCGCTTATCACGAAGTCTTCGGTAAGCTACAGAGCGAGATAGCGGCCGGTACGACTCTCGTCGGTGGTACAGTACCGACCCAGACCGTAACAACGATACAAAATGGCACGCCGATCGTTCAACAAGTTCAACTCAATAAATTTGACATAAAAACGAGCGACGGTGAGGCTACACCGGGACCAAGCGCATCGCCTGTTTCCGTTGGCAGTCACGCGTGCGAAGTTTGCGGCAAAATATTTCAATTTCGCTATCAGCTCATCGTACATCGCAGATATCACACCGAACGAAAACCGTTTACGTGTCAGGTATGCGGCAAAGCATTTTCAAACGCAAACGATCTAACCCGTCATGGAAAGTGTCATCTTGGTGGTTCCATGTTTACATGTGCGATTTGCTTTCACGTATTTGCAAACGCTCCTTCCCTCGAGCGTCACATGAAGCGTCACTCAACTGACAAGCCCTACAATTGCACCGTTTGTGGCAAGAGTTTCGCTCGCAAAGAGCATCTCGATAATCATACGCGTTGTCACACCGGTGAAACTCCGTACAGGTGTCAATACTGCGCGAAAACATTCACGCGTAAGGAGCACATGGTCAATCATGTCCGAAAGCACACGGGAGAGACACCGCATCGTTGCGACCTTTGCAAAAAGAGCTTCACGCGAAAGGAACACTTTATGAATCACGTGATGTGGCACACCGGCGAAACGCCTCATCATTGTCAGGTTTGCGGTAAAAAATACACCCGCAAAGAGCATCTCGCTAATCACATGCGCTCGCACACCAATGATACACCGTTTCGCTGTGAGATATGCGGCAAGTCGTTTACGAGGAAGGAGCACTTCACGAATCACATAATGTGGCACACCGGTGAGACGCCGCATCGCTGTGACTTCTGTTCGAAGACGTTCACGAGGAAGGAGCATCTATTGAACCACGTTCGCCAGCACACGGGTGAAACGCCCTTCCGCTGTCAATACTGTCCGAAAGCGTTTACGCGGAAGGACCACCTGGTTAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCGTTCACGCGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGTCACTTCTGCTCCAAGTCGTTCACCCGGAAGGAACACTTGACGAATCACGTTCGAATCCACACCGGGGAATCGCCCCACAGGTGTGAATTTTGCCAAAGGACCTTCACGAGGAAGGAACATCTCAATAATCATCTGCGTCAACATACCGGGGATTCGTCGCATTGTTGCAACGTTTGCAACAAACCGTTCACGCGAAAGGAACATCTTGTAAATCATATGAGATGTCACACGGGTGAGCGTCCGTTTGTTTGCACCGAGTGCGGCAAGAGCTTCCCGCTCAAGGGTAATCTTCTCTTCCACATGCGTTCGCACAACAAGGGCAGCAACGCCGAACGACCATTCAGATGCGATCTTTGCCCTAAGGACTTTATGTGCAAGGGTCATCTGGTGTCCCACAGACGTTCCCACTCGGACGAGCGACCGCACAGTTGTCCCGATTGCGGCAAAACTTTCGTCGAGAAAGGAAATATGCTGAGACATTTGAGAAAACACGCGGCAGAGGGCGCACCGACGCAAGTCACAGCGGCAACGGCGATAGTTCAACCGGGCGTATTGCCGATACCGGCAGCTGCCGTTCTCGTTGGACATCCTCTCGCTCCACCCGCGCCTCCGGTCGTACCTCAGCATACCGTTGTCGTGCCAACGCCACCGGGAGTTTTGGCCTCTTACTGA
- Protein Sequence
- MNSEQHALPDTTQAQQEANLANASSSSQGQLGSSQQSPSSDQRVGTAVALASVAKYWVLTNLFPGSIPQVSLYHTQQNSSTSPRSAAIGDIHVQTKDGVANASLSQEMAMTPVTQHQTNNTAHQHHQNTINVVAGSNNPGNIVHGSLQTSSQIPVSLPGLNLDGTHIQASHLQAAHAQMQQQMQSQQLHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAHHQMQSHQNQQNNGQTSQNPNAQRDENKVKDEGGSCTTERCSDNQVHCQVQCDLQLQQPQDLQQSMMQQQQIVSIAGNTSNDNPNNSTKTEKDKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCAICFHVFANAPSLERHMKRHSTDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDLCKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCNKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGAPTQVTAATAIVQPGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00899003;
- 90% Identity
- -
- 80% Identity
- -