Apic003996.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- lola
- Assembly
- GCA_946863875.1
- Location
- OX333071.1:71421272-71425855[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-05 0.03 14.7 0.0 3 38 198 233 196 239 0.74 2 4 8.5e-11 9.3e-08 32.4 0.0 5 38 250 282 247 288 0.92 3 4 0.002 2.2 8.8 0.0 19 34 315 330 303 335 0.76 4 4 1.5e-10 1.7e-07 31.5 0.1 5 39 362 396 361 401 0.92
Sequence Information
- Coding Sequence
- ATGTCAGAGACCGAAATAGAGAGTGAGCCCAACAACGAGCTGAATTGTTGCTTCAAATGGACCGATCATCAGAGTTATCTTTGCGACGTTGTTCGACAGCTCCTGGAAGAGGAATGCATGGTCGACGTGACTCTCATCGCGGATGGCGAACGCATTCAAGCCCATCGAATAGTACTGTCCTCCTGCAGTACATTGTTTCAAGAGATTCTCAGCGAATCGAAGGAGCCGCACACCACGATTATATTGAGCAATATATCAGCGCAGGATGTACGAGCTATCGTTGAATTTAGCTATCATGGAGAAGTTAGAATCCCTGTTGAGAATATTAATGATTTACTCGAGGCTGCTCATTCGCTCAGAATTTGTGGTCTTATGGAGATTGACGGACTGGACGAGAATGATGGGATAATAAGTGCAAAGGACACTTCCGAGGATAATATTGAGAGATTGGAGGATTTTGATGAATCGTGCGATAAGGGGTCGCCCTTATCCTACAGAGATGTGGAAAAGAGCTGCGAGGAGGAAGAAAAGTGCTCCACTGTAAAGAGGAAGAAACATCGACGAGGGAGCATGAAACTGCAATACAGCCGCGATATGCTATCATCAGCGATAAACGATTTAAAATCGGGTCGTACGCTTTTAGACGCCTCGAACGCGCATAATATACCACGTTCGACTCTCTACATGAGGGCGAAAGCCCTGGGAATACAGCTGAATGCAGCGAGAAACGAGTATCCCGCGGAATGTATGAAGGCCGCCATTGAGGCTGTTTTAGGGGGTTCGAGCTTGCAGCGTGCCTCAAATAAATACTTCATACCGAAAACCGTTCTGTGGAGAAGAATACAGAAAGATGGCTATCAAATATTACGCGCGGACACGAAACGATCTTACGGATCGGAAAAGAGAGAAGCAGCCGTGAAGGCCCTCGAACGAGGTGAAAATCTCAGTAAAGTTGCACAGGAATATCAGATACCAAAAACTACGCTATTTCGCGACAAGGTGAGACTCGTCGACGAGGGAAAATTGCCGGAAACTCATTGGAAGAAGCGCAAGACCGAAAACGAAGATTTCAAGCTTTTGCGTCTTGAGAAGGCCGTTGCCGCTTGCAAAGGCGGAAGAATGTCGCAAGCGGCGGCAGCGATGGCGTACAGAATACCAAAAACAACGATATGGCGACGATTGCAGAAAGATGGAAAAACGAGCATGAACATCACGACAAGATTGACGTTACGAACGAAGAAAAATGGAAAAGATCCCGTTGGGAACGAAGAAGGGAATCCCGAAACCGCGCTCTGTGATTCGGGCGAGACCAACACAAATGTGGTATCCTCGGAAATTCCAATAACGTACATGGATCAAAATCTAACCGCCGATTCTGTGATAATATTGACGTCGGAAGACGACGGCCTGAAATTGGACGAGGACGAGCAGATTATCGTAAACGATGATACTGGACAGGACTATATTCGATGCCCTCAAAGCATGGACGATCATTCAGAAACTGTAGACTATCAAGAAGCGGAGAGCTAG
- Protein Sequence
- MSETEIESEPNNELNCCFKWTDHQSYLCDVVRQLLEEECMVDVTLIADGERIQAHRIVLSSCSTLFQEILSESKEPHTTIILSNISAQDVRAIVEFSYHGEVRIPVENINDLLEAAHSLRICGLMEIDGLDENDGIISAKDTSEDNIERLEDFDESCDKGSPLSYRDVEKSCEEEEKCSTVKRKKHRRGSMKLQYSRDMLSSAINDLKSGRTLLDASNAHNIPRSTLYMRAKALGIQLNAARNEYPAECMKAAIEAVLGGSSLQRASNKYFIPKTVLWRRIQKDGYQILRADTKRSYGSEKREAAVKALERGENLSKVAQEYQIPKTTLFRDKVRLVDEGKLPETHWKKRKTENEDFKLLRLEKAVAACKGGRMSQAAAAMAYRIPKTTIWRRLQKDGKTSMNITTRLTLRTKKNGKDPVGNEEGNPETALCDSGETNTNVVSSEIPITYMDQNLTADSVIILTSEDDGLKLDEDEQIIVNDDTGQDYIRCPQSMDDHSETVDYQEAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00051131;
- 90% Identity
- iTF_00051131;
- 80% Identity
- iTF_00051131;