Aoxy013268.1
Basic Information
- Insect
- Allophyes oxyacanthae
- Gene Symbol
- -
- Assembly
- GCA_932294395.1
- Location
- CAKOAO010000172.1:134600-146256[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.12 8 7.6 0.8 1 23 279 301 279 301 0.95 2 11 0.002 0.13 13.2 1.2 1 23 308 331 308 331 0.93 3 11 0.29 19 6.4 0.2 1 23 335 357 335 357 0.92 4 11 0.041 2.7 9.1 1.0 1 23 362 385 362 385 0.98 5 11 0.0028 0.18 12.7 0.7 1 23 389 412 389 412 0.96 6 11 3.5 2.3e+02 3.0 0.1 2 19 425 442 425 445 0.78 7 11 0.23 15 6.7 0.7 3 23 501 522 499 522 0.95 8 11 0.0041 0.27 12.2 0.6 2 20 538 556 537 559 0.92 9 11 3.1e-05 0.002 18.9 3.1 1 23 565 587 565 587 0.99 10 11 0.00024 0.015 16.1 2.8 1 23 594 616 594 616 0.98 11 11 0.0037 0.25 12.3 4.9 1 23 622 645 622 645 0.90
Sequence Information
- Coding Sequence
- atggcgttggcaacagttttggtAACAGTCATAGACTATAACAGTAGTGTGGTTTGCAGAATATGTCTTGCTATGGACACACGGATGTATCACATAAGAGAATTCAAACTGGACCAAATGTATGAACAAATCACAGGATTAATGGCTAGCAGTGAAGAGAGGCTGCCACAGCGGGTGTGCTGGGAATGTAGTGCTCGCTTGACTGCGGCCTACCGATTCAGGAGCCAGGCTTTACGGAGCGACACAATATTACATGAGTTACTTCACCCTGACACCTATATAAAAATCCGCgacataaaatcaataaatcgAACACATAATGGTCTCAAATCATGTTTAATACAAAAGATATTTGACAATAGTGATTACGATTTACACTTACGAGATGTCCTCGTTAAAACTGAAGAAGAATCAGGAATGATACATGATAATATAATAGCAGACGATAATATTGAGATGCAAGAGAAAGTTATTGCGCCTATAACAGAAGTAGAAGTCAAAGATGAGAGTAGTAACGAGATATTCTTTGAGGAatatgatcattttgatgatgatgatgataaaacaTTAAGTGAAGTATATGGGGAGAAGAAACAGAAGGAGAAAGTTAAGAAGAAGAAGGAGAAAGTGGTTAAAAAGGTTAAAGCTAAAAAGATTGAGGACGAAGATGATCCTGGTACTGCTATGGACAGgtACAAAAAATCGGACGTCAAACGTCGCAGAACCAACGAAGCGCTCGACGAGTCTCTATTCACGATCTCTTCTCTAACATACGACCAACAAATACAAGAGATTCTCAAGCGACAAGAGAGCACCAGCTATGTGAACGCGCCGTATAAGTGTACCGTGTGCTACAGGGGGTTTCAGATTAAGGACCGGTTTACGGCTCATGCTGTCCGGCACAGTGAGCAAAGTGGCGCGTACGAGTGTTTTATCTGTAAGACGCGACTCAAAAACAGTCGCGCATTACGCAAGCACTTGACGGCTCAGCATACAGAGCAATACAGTTGTAAGGGATGTCCGTTCGTCACTCGAAATAGAGGAGTAGCCAGGGAACATGAGAAATGGCATGCTGGTACTAAATACCAGTGTCCACACTGTGCTAGTGAGTTTGACAAACTAACAACATACATGGGCCATATTCGTATCAAGCACGTGTCAGACTTTGTGTGTGAACTGTGTGGGTACACGTTTGTGAGTAAGAAAGGGATAGACGTCcacaagaaaaagaaacatCGACTCGTTGATAAAGCGATAACTCTAGAAGGGCCGTACTGTGAAGTGTGTGATGTCAAGTTTGTGTCGGAAGAAGCGCACGATAGACATCTCAAGTTATCGTCCAGACATAGCAGTGATCATGACCcCAACCGTATACGCAACGACTCACAAAGCATGAACGCAGAACGCAACGGTCGGGTCATGAGACGGATAGAACGCCGACCGGTCATACACCCGCGAGATCCCGCCGACATGAACCACGAGCCACACACACCCGTGCACTGTGAACAGTGTGGCATACAACTCCGCGATTTACGGCTATACGCGCAACACTTCAGACGAGCTCACCCCGACAAGAATCGAACCAAATACCCCGCGATGAAAACCCCTTGCATGTGCGAGCAGTGCGGCAAGATCTTCCAGAGTATGGCCCTCCTAAAAGACCACATGTGGGTCCACACGGGCGAGAAGCGCTTCAAATGCGACCGCTGCACCAAGAGTTTCACGCAGAAGACAAACTTGGTGTTCCACATGCGCGTGCACAGCGCGACGCGACCCACGTACGAGTGTCCACTGTGCGGGAAGCATTTCGCCTTCTTTAATAATCGGAGGAGACACATGTTTATCCACACAGGCTTAAAGCCTTTCAAATGCGACACGTGCGGCAAATGCTTCACCACATCCGGTGAACATCGCGCGCATGTCGAGCACGTGCACCTCAAGAAACCCTGGCCGAAGAGGGCACGGCAGAGAGGCCGGGACTGGAAGTGCGACGAGCCTAGTGCGGAAGACTGA
- Protein Sequence
- MALATVLVTVIDYNSSVVCRICLAMDTRMYHIREFKLDQMYEQITGLMASSEERLPQRVCWECSARLTAAYRFRSQALRSDTILHELLHPDTYIKIRDIKSINRTHNGLKSCLIQKIFDNSDYDLHLRDVLVKTEEESGMIHDNIIADDNIEMQEKVIAPITEVEVKDESSNEIFFEEYDHFDDDDDKTLSEVYGEKKQKEKVKKKKEKVVKKVKAKKIEDEDDPGTAMDRYKKSDVKRRRTNEALDESLFTISSLTYDQQIQEILKRQESTSYVNAPYKCTVCYRGFQIKDRFTAHAVRHSEQSGAYECFICKTRLKNSRALRKHLTAQHTEQYSCKGCPFVTRNRGVAREHEKWHAGTKYQCPHCASEFDKLTTYMGHIRIKHVSDFVCELCGYTFVSKKGIDVHKKKKHRLVDKAITLEGPYCEVCDVKFVSEEAHDRHLKLSSRHSSDHDPNRIRNDSQSMNAERNGRVMRRIERRPVIHPRDPADMNHEPHTPVHCEQCGIQLRDLRLYAQHFRRAHPDKNRTKYPAMKTPCMCEQCGKIFQSMALLKDHMWVHTGEKRFKCDRCTKSFTQKTNLVFHMRVHSATRPTYECPLCGKHFAFFNNRRRHMFIHTGLKPFKCDTCGKCFTTSGEHRAHVEHVHLKKPWPKRARQRGRDWKCDEPSAED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00450559;
- 90% Identity
- iTF_01342556; iTF_01342283;
- 80% Identity
- -