Aoxy001535.1
Basic Information
- Insect
- Allophyes oxyacanthae
- Gene Symbol
- -
- Assembly
- GCA_932294395.1
- Location
- CAKOAO010000020.1:1812025-1817743[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.018 1.2 10.2 0.1 1 23 219 241 219 241 0.98 2 12 0.001 0.067 14.1 8.1 1 23 247 270 247 270 0.97 3 12 3.3 2.2e+02 3.1 3.7 1 23 284 306 284 306 0.88 4 12 4.2e-05 0.0028 18.5 3.1 1 23 542 564 542 564 0.98 5 12 0.013 0.84 10.7 1.3 2 23 570 592 569 592 0.96 6 12 0.0018 0.12 13.3 2.2 2 23 601 622 600 622 0.96 7 12 0.21 14 6.9 3.3 2 23 626 647 625 647 0.93 8 12 0.11 7.3 7.7 1.7 2 23 661 683 660 683 0.96 9 12 8e-05 0.0052 17.6 1.9 1 23 689 711 689 711 0.98 10 12 0.00037 0.024 15.5 1.7 2 23 718 739 718 739 0.98 11 12 0.0041 0.27 12.2 1.7 1 23 745 768 745 768 0.96 12 12 0.00038 0.025 15.5 2.0 1 23 772 795 772 795 0.97
Sequence Information
- Coding Sequence
- ATGGATGAAGATATTTTTTCGGATTATTGCATTGTAAACGCTAAGAAAACGTATTCAAAACCATTCAAGCTGATACCGTCAGGACCAAAGTTGCAGAATACGAATAAGATCTTTAAACCTGTAGAAAACACCAatgaaactataataaaatgcgAACCATTATCTACGAAAACTGCATTAGAATATTTACTGAATGGGAAGCTGAAATCTGCAGTGTGTCGTTACTGCCTCAATATATCGCCTGGATTGTCTGAATTGGACCAGATTATGCAGATTGCTGGCACAGGAACTCTGTACAAAGTGACTATAAGAGAGATGATAGCTTGTTTCTATCCTTTCAAGGCTAGTGATGACCAGAACTTTCCAGAGAAAATATGCCAAAAATGTTTGGACAAAGCTATCAATGCGTACCTCTTCACTCAGCAATGTGAGCAAGCTGAAAGAGCATTACACAACTGTATTGATGACATGTATGAGAAATTAGGGAAGCTCGACCCAATAGACAGACCGAAAAAGAGGGGCCGGCAGAAACTGAACCCAAACTATAATGTTTTGTATGCAGAACATGATAAAGTCATTGATTACGCAGAACCAGTAAGaaacattattaacataaaaGCAGAATCCTTGTCAATAGAACCGGAGTGGAACGATTTTGAATGTAAAAAGTGCTGGCAGGTACTCCCAAACATAGAATCATTACTGAACCATGAGAAAATACATCCAAAATACATGTGGTATCACTGCCGATTGTGCGGCAAATCATTCGTGAAGCACAACCAACTGAAAAGGCACCATAATCGAGTCCATATTCTTGGAAAAGGCACCCATTCAGAGGTGGACACAAGTTTTAAATGTAATGAATGCGGACATTTTACAGAGAACTATATTCAGCACTTACAGCATATCGAGAAACATAAATTTAAGAGTATTATGGATCATATAATTAAGAAGAAAACTGATAGGTTATGTTTGATTTGTCTTAACAAGAGTACGAATTTGGTGGAATTGGATAAAATGGTGTGCATACATGGAGGGTATCCAGAATTGGTGGGGGATAAAACACTATACACCGTTTTGGCCTCAACTTTACCAAACATGAACTACCTACACGACTTCATTGGGACAAAAATATGCGAAAAATGCCTTAATCATGCAATTACttcatacatatttatacaccaatttaattttactaggGAACGTCTTGATTTATGTGTCAGCCTCATGTTAGAAAACCTTAGTACAATCAGGCCACACACTAATGTATTCGTGCAAATTTCACCGCGTACAATCATGCCACCACAAGTAGAAGTCGATGAGAACTTATTACTTGAGGATGAGTACATAGACGAAACCAAACTTAAAGTGGATGTCTTGGAAGATGAATTCAGGCTGAAATCTGATAGCGAAAGTGAACCAGAAGTTAAACCTATTAGAAAACATAAAGTTACTTTATTCTCACAAGTGCCAGATATAGACAATCCTGCTAAGAATGCAACAAAAACTTATTCAAATAAGAAGTTGGTGAATGGCTTGCAGAACTCGAGATACTCGGTAGATGTATGCAGTGAATTCCTaacattcaacaaaaaaaagaaagtgaAAAAAGTTTCGATCAAATACACTTGTCCTTTGTGCAGCAAACATTTCATATCAGAATATTTCTTAAAAAGACATATTCTAAAACATATGAATAAGAAAGTGGAGTGCAGGACTTGTGCAAGAATATTCAAATCTAAATTCCAACTGTACGAACATACGAAAATGACGCATTTATTAAACCATAGTAATTATATGTCTTGTAAAGTGTGTGAAAGGACTTTTACAAGCGGAGATAAATTAAGAATACATGAGAGACACCATAGGAACAAGCCTTGCCAACTTTGTGACAAAATATTTGCATCTCAGAAGCACTATGACTGTCATATCGAAAGACATGCTGTCAAATTGAAGCTTACAAAACAAAAGCAGGCACAAACATGCAGTTTTTGTGAGAAAGAATGCTCAAACGATAATGATCTCTCTCTCCATGTAAATAAGGTGCATTTACAAATAAAACCATACAACTGCGACATGTGTGAACGACAGTTCTACACAGAAAACAATTTGAAGAATCATAAAAGGGTACATAGTTTGCCTTCGAAGGAAAGGTGCGAATTTTGTGACAAGACGCTTAAAAGTAGGAAACAGTTAGTTATTCATGTTAGGAAACATATTGATGTGAAACCCTTTTGCTGTCAAGTTTGTGGCCAAGCCTTCTACTCCGCTTTCAAAGCTAGAGACCATATGAAAGTGTACCATGGTGGTAGCTTTTACTGTAGAATATGTAAATCTACTTTTGTAACCAAATCTAAACTTAAAGAACATGTTAATAGGGATCATAGTTTCATTTAG
- Protein Sequence
- MDEDIFSDYCIVNAKKTYSKPFKLIPSGPKLQNTNKIFKPVENTNETIIKCEPLSTKTALEYLLNGKLKSAVCRYCLNISPGLSELDQIMQIAGTGTLYKVTIREMIACFYPFKASDDQNFPEKICQKCLDKAINAYLFTQQCEQAERALHNCIDDMYEKLGKLDPIDRPKKRGRQKLNPNYNVLYAEHDKVIDYAEPVRNIINIKAESLSIEPEWNDFECKKCWQVLPNIESLLNHEKIHPKYMWYHCRLCGKSFVKHNQLKRHHNRVHILGKGTHSEVDTSFKCNECGHFTENYIQHLQHIEKHKFKSIMDHIIKKKTDRLCLICLNKSTNLVELDKMVCIHGGYPELVGDKTLYTVLASTLPNMNYLHDFIGTKICEKCLNHAITSYIFIHQFNFTRERLDLCVSLMLENLSTIRPHTNVFVQISPRTIMPPQVEVDENLLLEDEYIDETKLKVDVLEDEFRLKSDSESEPEVKPIRKHKVTLFSQVPDIDNPAKNATKTYSNKKLVNGLQNSRYSVDVCSEFLTFNKKKKVKKVSIKYTCPLCSKHFISEYFLKRHILKHMNKKVECRTCARIFKSKFQLYEHTKMTHLLNHSNYMSCKVCERTFTSGDKLRIHERHHRNKPCQLCDKIFASQKHYDCHIERHAVKLKLTKQKQAQTCSFCEKECSNDNDLSLHVNKVHLQIKPYNCDMCERQFYTENNLKNHKRVHSLPSKERCEFCDKTLKSRKQLVIHVRKHIDVKPFCCQVCGQAFYSAFKARDHMKVYHGGSFYCRICKSTFVTKSKLKEHVNRDHSFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01342473;
- 90% Identity
- -
- 80% Identity
- -