Aoxy013269.1
Basic Information
- Insect
- Allophyes oxyacanthae
- Gene Symbol
- Rreb1
- Assembly
- GCA_932294395.1
- Location
- CAKOAO010000172.1:151867-166684[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0053 0.35 11.9 0.8 1 23 216 238 216 238 0.98 2 11 0.00075 0.049 14.5 0.8 1 19 245 263 245 265 0.96 3 11 8.5 5.6e+02 1.8 3.3 1 23 271 293 271 293 0.87 4 11 0.0035 0.23 12.4 1.0 1 23 298 321 298 321 0.97 5 11 0.0048 0.32 12.0 0.1 2 23 326 348 325 348 0.93 6 11 0.038 2.5 9.2 0.1 3 21 362 380 362 381 0.95 7 11 1.9 1.3e+02 3.8 0.1 3 23 429 450 427 450 0.95 8 11 0.0062 0.41 11.6 0.1 2 19 466 483 465 487 0.92 9 11 2.2e-06 0.00015 22.5 2.0 1 23 493 515 493 515 0.99 10 11 4.5e-07 3e-05 24.7 0.5 1 23 522 544 522 544 0.97 11 11 7.5e-05 0.0049 17.7 4.3 1 23 550 573 550 573 0.95
Sequence Information
- Coding Sequence
- ATGAAGAAATACAACCTTTTCATGTATTATGAACAAATCACAAAATTAGATGCATTCGGTGAGGACAGACTACCACAATTCGTTTGCTGGGAGTGCGGCGTGAGGCTGGCTGCTGCAGCCTCCTTCAGAGCGAAGGCTTTGCGAAGCGACGCGCTTCTGCAAAATATACTACCAGAAGTCTATCCAGATCGAGATATCTCAACTATAGACCGCGAAAAGCATAATCTAACTacgaatttaaaacaaaaatcatttgAAGCCAACCATGCTGACTTCCATTTTATATACACTGAGCCTTTACACACAAATATACTACAAGACATACAAGAAATAAACTTACCTGATATAGATATCGAAAATGACTCCGAAATAATTACTTTCACCAACTCATCTTACGACgaaactctttttaaaataagcaagaaagttaaaaagaaaaagagtatACACAGAGTCGGAAAAGTCGAACCAGTCAGAATAGTCGGAGAAGTCGAAGAAATCGCAGTCAAGAAAGTCGATAAACGCTATAAGCCGGCAAACGAAGTGTTGAATgaagatatatttaatataactgACTTGTCGCATGAGCAGCAAATGtatgaaatacaaaaaagacAACATTCGTCAAATTATAAAAACTCTGAATTTAAGTGTACTGAATGTTTCAAAGGATTTCTAGATGAAGACGCTTATAAGGGACATATGAACAGACATAGCGATCAATGCGGCACCTACCAATGCCACATTTGCAAGATCCGTTTCAAAAAACTACAAGCACTCAGAAACCAtgctacatgtcacatgcagaaGTTCAGCTGCAAAAAATGTACATACATAACTTTTAGAAGACATGCAGCCAAATTACATGAAGATTATCATAACGGGACCAAGTATGCATGTCCGCATTGCTTAGAGAATTTTGACAAAATATCCACATATATGAGCCACATCCGCATCAAGCACCCTTCGGATATCGTGTGCGAGTTGTGCGGGTACTCCTTCGTCAGCGCCAAGGGGTTGGGGCTCCACAAGAAACTCAAACACCGCTTTGATGACCAACAAGTTCCATCAGATGGGCCGTGGTGTACTAAATGTGATATACAATTCATGAACACGGAGGCGTTAGAAAGACATGTACAGTTATCAGGGAGGCACAGCGATGAGATagaACCCAGCAGAAAACGGGAGCGTCGTCCTCGAGGGCTACAAGAGAGAAACAGCACGAGACAGAATTCAGAAGGAAAGAAGAAACGAAATAGCTGCAAGCCAGAAGGACCCATAGCTTGCGAACAGTGTGAAATACAGCTTCCAGACCCTCTGTCCTACTACAGGCACTTCAGAAGAATGCACCCGGACAAGAATCGAACCAAATACCCTTCAATGAAGTCTACGAGCATGTGCGAGGTCTGCGGGAAGATGTTTCAGAGTCTAGCGCTCCTCCAAGACCACAGCTGGACCCACACGGACGACAAGCACTTCAAATGTCCGCAGTGCGACAAGCGCTTCCAGAGGAAGTACCGCCTCATAGCGCACCGGAGGGTGCACGGCGATGCGAGGGGGGGGCATGTGTGCGGGCTGTGCGGGAAGGGGTTCAGTACGGCCAGCAACGTGCAGAGGCACATGTTGAGCCACACCGGCCTAAAGCCGTTCAAATGTGAGATGTGCGGCAAATGCTTCAAGCACGCGAGCGAGAAACGCGTCCACATCACGTACGTGCACCTCAAGAAACCCTGGCCCAAGCGCGCTAGGGGGAAGAGGAAGGATAACAGACAGAATCAGTTCCAACAACAGCCCCCGATGCCCCCAAACCCCGGTGATATCGAGCAACCACTCTGGCCAACGTGTAACAACCCCAAGATTAACGTTATGGTGGAAGATAAATCTATgtattataacattaaaatataa
- Protein Sequence
- MKKYNLFMYYEQITKLDAFGEDRLPQFVCWECGVRLAAAASFRAKALRSDALLQNILPEVYPDRDISTIDREKHNLTTNLKQKSFEANHADFHFIYTEPLHTNILQDIQEINLPDIDIENDSEIITFTNSSYDETLFKISKKVKKKKSIHRVGKVEPVRIVGEVEEIAVKKVDKRYKPANEVLNEDIFNITDLSHEQQMYEIQKRQHSSNYKNSEFKCTECFKGFLDEDAYKGHMNRHSDQCGTYQCHICKIRFKKLQALRNHATCHMQKFSCKKCTYITFRRHAAKLHEDYHNGTKYACPHCLENFDKISTYMSHIRIKHPSDIVCELCGYSFVSAKGLGLHKKLKHRFDDQQVPSDGPWCTKCDIQFMNTEALERHVQLSGRHSDEIEPSRKRERRPRGLQERNSTRQNSEGKKKRNSCKPEGPIACEQCEIQLPDPLSYYRHFRRMHPDKNRTKYPSMKSTSMCEVCGKMFQSLALLQDHSWTHTDDKHFKCPQCDKRFQRKYRLIAHRRVHGDARGGHVCGLCGKGFSTASNVQRHMLSHTGLKPFKCEMCGKCFKHASEKRVHITYVHLKKPWPKRARGKRKDNRQNQFQQQPPMPPNPGDIEQPLWPTCNNPKINVMVEDKSMYYNIKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01342482;
- 90% Identity
- -
- 80% Identity
- -