Aoxy009737.1
Basic Information
- Insect
- Allophyes oxyacanthae
- Gene Symbol
- PRDM15
- Assembly
- GCA_932294395.1
- Location
- CAKOAO010000122.1:1407463-1412856[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.28 19 6.4 0.2 1 10 47 56 47 65 0.91 2 13 0.0011 0.073 14.0 5.4 1 23 84 107 84 107 0.96 3 13 0.009 0.59 11.1 0.6 3 23 116 137 115 137 0.97 4 13 4.5e-05 0.0029 18.4 0.7 1 20 142 161 142 163 0.94 5 13 5.1e-07 3.3e-05 24.5 0.3 1 23 174 197 174 197 0.97 6 13 1 67 4.7 5.1 1 23 203 226 203 226 0.95 7 13 0.0012 0.082 13.8 2.3 1 23 233 255 233 255 0.98 8 13 0.012 0.81 10.7 0.3 1 23 260 282 260 282 0.98 9 13 1.7e-05 0.0011 19.7 1.0 1 23 288 310 288 310 0.98 10 13 0.0063 0.41 11.6 0.3 5 23 317 335 314 335 0.93 11 13 5.1 3.4e+02 2.5 0.0 8 23 353 368 342 368 0.87 12 13 0.00038 0.025 15.5 3.3 1 23 374 396 374 396 0.97 13 13 1.3 83 4.4 0.2 3 23 404 427 403 427 0.83
Sequence Information
- Coding Sequence
- ATGCCGCCTAAACGTAAGAAGTTAGGGCGACCGCCTGGGTCCAAAAATAAGAAATCGACAGCTAAAAATCGTGTGCGATTCAAGTCTGTTATGATAGCGAAGAAGAAAAACGACAAATCATCTGCTAAAAAGATTGAATACGTTTGTAATGTGTGTAATAAGAAATTCCTGACCGGAAAGGCGATGTTGACCCATAAGGGTTGTCAGAAAGGTTTACAATTGCCCGATGCAGTTTTCACAAAGgcGGCATACAGTTGCAAAGAATGCCCCAAAAAGTTCAGGTTCAAGAAAAGTTTCATAGACCATCGTCACAAAGAGCACTCCAAGTTACCAGACAGTGTTGCTTGTGACCAGTGCAATGTCCGTTGTCCTGATAGAAGCACATTGATTGGACACATCAAGAAAGTTCATGAGAGGGACATTTTTGCATGTCCACATTGCAATAAACAGTTTGTCCGACGTGCACATGTACTGCGACATATGGCTCAGAGTGGATGTGATGGTCAAGGAGCTGCTTCATTTTCATGCGAAATATGCGATGCAAAATTTTCAAGAAAAGACAATTTGATGGTGCACATTCGGTTGCAACATATTATTAAGAATGAGTTCTTTTGTAAGAACTGTTTATATACTACAAAGAACTTTTCCAAATTGGTTAACCATTGGCACAAAAATCACTCTGatACACCTGATCAGTACCAATGCCACCACTGTGGGAAGTGGACCAGCTCCCGTGCTGCCATGACCAAGCACCTCGAGATACACGGCGAGAAGAAATATTCATGTGATGTGTGCGGCTACAGCACATTCACGATCGAGGTGATGCGCCGCCACGTGTTGACGCACGTGGACGACAAGCCGTACAAGTGTGCGCTGTGTTCCAAATCGTACATCCAGCGCGTGCAGCTGCAGCGCCACCTGGAGAAACACACAGGCAACATGTGCATCAAATGTGGCGCCACTTTCAACTCTAGAGCCAGGTTGCTGATCCACATGAGAGAACACATGGGATTAGAAAAGTTATATTGCCCCATTAAGACATGCGTATACTCAACCAAAGAATTCATCAATGAGGCCGGTTTGGATAATCATTTAAAAGTGCATTTAGATGACAAACCGCACAGCTGCGAAGTGTGCGCAAAGAAGTTCCACTCGGAGGTGAACCTGCGGCGTCACCTGGAGACGCACACGCTGGACCGGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGGGCCTACGTGCGCGGCGAGCAGCTCATCCGCCACGTGCGCAAGCTGCACCCCGCTGTGTTCAAGGGCCACCTGCTCCACGTGCGACAAGTGCTCGGCGCCAATAATTCCATGGAGCGAGTAAAGAAGTCTGAAATAGAGTCGATACTCAATTTGTTAGATGTGGAATCGGATCGTATTCTGCAAGGGTACAGCGGGTCGGGCGTGCTCTACGGTGGGATGCAGGAGGACGAGGGCAGCTCCAGTGCTGACAAACAGCAAGACATGAAAGTAAATGGTCCTCTATTGTCAGAGGAGGAGCTCACAGAGAATCTGAAAATGCTACTTTCGCAGCTCATTGATAAGGAGACACTCGATCTGTTTGGATGGCCGGACGAGAGTGTGGATATGGTATTAGAGAAAGTAATCGAGCAGTGTGGTGCTAAACCCGCGGACCGTGACAAATGGACGCGCGTGCAGCGCCTCAGAGAGAACTCCAAgcatttgtttttatatgtCATCGAAGACAAAAACATAGCGCGCATGCTCGATACACACACCATTGATCAAATCGTCAAGCACATACTCAAGCAAGTCAGCGAAGATGAAACCAAGGAAAGTATCTAG
- Protein Sequence
- MPPKRKKLGRPPGSKNKKSTAKNRVRFKSVMIAKKKNDKSSAKKIEYVCNVCNKKFLTGKAMLTHKGCQKGLQLPDAVFTKAAYSCKECPKKFRFKKSFIDHRHKEHSKLPDSVACDQCNVRCPDRSTLIGHIKKVHERDIFACPHCNKQFVRRAHVLRHMAQSGCDGQGAASFSCEICDAKFSRKDNLMVHIRLQHIIKNEFFCKNCLYTTKNFSKLVNHWHKNHSDTPDQYQCHHCGKWTSSRAAMTKHLEIHGEKKYSCDVCGYSTFTIEVMRRHVLTHVDDKPYKCALCSKSYIQRVQLQRHLEKHTGNMCIKCGATFNSRARLLIHMREHMGLEKLYCPIKTCVYSTKEFINEAGLDNHLKVHLDDKPHSCEVCAKKFHSEVNLRRHLETHTLDRPRRCMYCVSARAYVRGEQLIRHVRKLHPAVFKGHLLHVRQVLGANNSMERVKKSEIESILNLLDVESDRILQGYSGSGVLYGGMQEDEGSSSADKQQDMKVNGPLLSEEELTENLKMLLSQLIDKETLDLFGWPDESVDMVLEKVIEQCGAKPADRDKWTRVQRLRENSKHLFLYVIEDKNIARMLDTHTIDQIVKHILKQVSEDETKESI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01260393;
- 90% Identity
- iTF_01342474;
- 80% Identity
- -