Aoxy016106.1
Basic Information
- Insect
- Allophyes oxyacanthae
- Gene Symbol
- -
- Assembly
- GCA_932294395.1
- Location
- CAKOAO010000227.1:1213141-1215954[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0074 0.48 11.4 1.1 1 23 58 81 58 81 0.93 2 17 0.32 21 6.2 1.0 5 23 156 174 152 174 0.88 3 17 0.019 1.3 10.1 0.5 1 23 178 200 178 200 0.91 4 17 0.017 1.1 10.3 1.2 1 23 205 228 205 228 0.96 5 17 0.0092 0.61 11.1 0.6 2 23 236 258 235 258 0.96 6 17 5e-05 0.0033 18.2 0.5 3 23 267 288 266 288 0.95 7 17 0.001 0.066 14.1 3.9 1 23 294 316 294 316 0.97 8 17 2.4e-05 0.0016 19.3 1.4 1 23 322 344 322 344 0.99 9 17 0.015 0.99 10.4 1.8 1 23 435 458 435 458 0.95 10 17 0.049 3.2 8.8 0.3 2 23 487 509 486 509 0.94 11 17 0.0017 0.11 13.4 0.7 2 23 532 553 531 553 0.97 12 17 0.1 6.8 7.8 0.0 1 23 557 579 557 579 0.94 13 17 0.099 6.5 7.9 2.1 1 23 584 607 584 607 0.91 14 17 0.00033 0.022 15.6 3.1 2 23 643 665 642 665 0.95 15 17 0.0012 0.082 13.8 2.2 1 23 671 693 671 693 0.97 16 17 7.9e-08 5.2e-06 27.0 1.7 1 23 699 721 699 721 0.98 17 17 0.0019 0.12 13.3 3.9 1 23 727 750 727 750 0.97
Sequence Information
- Coding Sequence
- ATGAGCGACACGGCATCGTCAGAATCTGCCGATGAAGCAGACAATACTAAACCATCTGaaaaggaatataaaaaaacgCCCAGAACTGACCTTTTAAAACATCGACATAATATTAAAGAAGTACTTCTTAATTCTAATGCAACGCCAATACGACGATACGGAGGTATTGGATACACTTGTTGTTATTGCGAAGAGCAGTATGCTGTTCCTGCTGATCTTAAGAAGCATACCCTAGATAAACATCAAGATATCAACACAGCAAACTTCATGAAGACAATGAACATGGCTGAATATGTCGTCAAACTAGATATAACTGGATTACAATGCAAACTATGCAACTGTGATATAAAAACTCTAGAGCTCATGATATGCCATCTTGAAAACGAACATGAGAAACATTTCCACAAAGATATCAGCAGTCATATCATGCCTTTTAAATTCGACGAAGAATTGTTGAGATGCATTCTATGTTTGAACACTTTCAGCAAATTCCGTATGCTTGTCAGACATATGAATATACATTACCGGAATTATATTTGTACTGTTTGTGACAACGGCTTCATAAACCGCAATTCGTTTACCCAACATTCAGTAAACCACAAAACTGGGACTTTCGAATGCGAATACTGTCCGAAAATCTGTTCCACGCTAGTAAAGAAGCGCTTGCACGAAAGAATTGTGCACACGCACACAGATGTTACGAGTAAATGTGGTTATTGTACAGAAACCTTTAAAGATTACAGAAAGAAAGAGGCTCATCTAGCTACTGTACATGGAATTAGATCATTGACGCCTGTTTGTCAGGCTTGCGACAAAGTCTTCAGTAGCAGGAAAATGCTCACCATTCATATAAAAAGGGATCATTTGATGGAAAGGCCTCACAAATGTACGGAATGTGAGATGACGTTCTTCTCTACTACTAGTCTCAAAAATCACATGGTGAAACACACTGGGCTGAAGGAATATCAGTGTTCGGTGTGCCTCAAGTCTTATGGGAGGAAGAAGACCTTAAGTGCACATATGCGTCAACACGAAGAAAAGAGGTTCAAATGTAAACCTCCAGCATATCCGGTTGTAGTTAGAGTAGAAGGGAACCAATGCAGTATTGTGGGACATAAAGAAATCAAACCTGCCCCAAAATCAAAACCATCTCCAAGCAAGGTAATCAATAACAATCCAGATGACAAAACAAATGAAGAACAAGCTATGTATGATGGCGGGCTTCGTGAACATAAGgctaatttaaaacaaataatgcgCTGGTCTAATGCCACGCCAATAAGACGTTATGGAAATACAGGCTACATGTGCTGTTACTGCGAAGAACAGTATCAAAAGCCGGCAAACCTGAAAACACACACCTTGAACGTCCACGCAAAAGAGGATATCACTAAAACCCGTTATATATGCACCATGAGCACGAGACAATTCTTTATCAAATTGGATATTACCTTACTAAATTGTAAGATATgtaaaaaagatataaatacTTTAGAAGAATTCATGCAGCATCTGAATGaagaccataaaaaaaaaatgtatagtgATATCAAAAATCAGATTATACCATTCAAGTTTCCTACAGATAACCTTGAATGTTTTATATGTAAGACCATTTTTAACAAATTCAAACTCCTAATTGACCACATGAAGGTACACTATAGTAACTACTTATGTAAGATATGTGACGCCGGCTTTGTAAACGGCGCTGGACTTGTCGAACACGCACTTATACACGAAACTGGGTCATACAAATGCGATTTCTGTCCAAAAGTATGCGACACAcaactaaagaaaaaaaaacacgaagcTATTGTGCACCAACGTAAAGTGTACCAACTCAGATGCGGCTATTGCATTGAGACCTTTAATGAGTATAGAAAGAGAGAGACACATTTAGCGTTAGTACATGGAGTGGGAATATCAGAGTGCCAAGCATGCCATAAAGTGTTCAAAACGAGAAGAACTCTAAACATGCACATAAAAAAAGATCATATGCTGGAAAGACCTCACGAATGCACGCAATGCGACAAAAAATTCTTCGCTGGttatgaactaaaaaaacataTGGTGATGCATTCGAACCTGAGGCCTTATCCGTGTTCAATTTGTAAGAAATCTTTTAAGGACAAGAAGACTTTGAGAGAACATATGAGGATCCACGAAGATGATAGACGGTTCAAATGCGAACAGTGTGGACAAGCTTTTGTACAGAAGAATTGCTTAACCTTCCATATGAAGTccaaacacaaaaatattgtttga
- Protein Sequence
- MSDTASSESADEADNTKPSEKEYKKTPRTDLLKHRHNIKEVLLNSNATPIRRYGGIGYTCCYCEEQYAVPADLKKHTLDKHQDINTANFMKTMNMAEYVVKLDITGLQCKLCNCDIKTLELMICHLENEHEKHFHKDISSHIMPFKFDEELLRCILCLNTFSKFRMLVRHMNIHYRNYICTVCDNGFINRNSFTQHSVNHKTGTFECEYCPKICSTLVKKRLHERIVHTHTDVTSKCGYCTETFKDYRKKEAHLATVHGIRSLTPVCQACDKVFSSRKMLTIHIKRDHLMERPHKCTECEMTFFSTTSLKNHMVKHTGLKEYQCSVCLKSYGRKKTLSAHMRQHEEKRFKCKPPAYPVVVRVEGNQCSIVGHKEIKPAPKSKPSPSKVINNNPDDKTNEEQAMYDGGLREHKANLKQIMRWSNATPIRRYGNTGYMCCYCEEQYQKPANLKTHTLNVHAKEDITKTRYICTMSTRQFFIKLDITLLNCKICKKDINTLEEFMQHLNEDHKKKMYSDIKNQIIPFKFPTDNLECFICKTIFNKFKLLIDHMKVHYSNYLCKICDAGFVNGAGLVEHALIHETGSYKCDFCPKVCDTQLKKKKHEAIVHQRKVYQLRCGYCIETFNEYRKRETHLALVHGVGISECQACHKVFKTRRTLNMHIKKDHMLERPHECTQCDKKFFAGYELKKHMVMHSNLRPYPCSICKKSFKDKKTLREHMRIHEDDRRFKCEQCGQAFVQKNCLTFHMKSKHKNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -