Aoxy005233.1
Basic Information
- Insect
- Allophyes oxyacanthae
- Gene Symbol
- -
- Assembly
- GCA_932294395.1
- Location
- CAKOAO010000062.1:2108847-2109569[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-13 5.6e-10 39.2 0.0 4 40 21 57 18 61 0.92 2 2 4.9 4.3e+03 -2.0 0.1 30 38 124 132 123 137 0.79
Sequence Information
- Coding Sequence
- ATGCCTCGAACATATAAAAAACCACTTGGAAgcagaaattataaaaactatgcGGAGTCCAAACTAGAAGATGCGGTGCAGGCAATTGCTAATGGAAGTGTATCTATTCGGGGAGCCGCAGAACAGTTTGATATTCCGTATGGAACACTATACAACAGGTATCAtggaaaacatattaaaaaaccAGGTGCTCAGCCTGTTTTCTCTGAAGCACAAGAGAAAGCAATACTTCAGGCTGCAGCTAAATGTGCAGATTTTGGTTTTCCGTTGAGTCTTTTAGATTTAAGAATGTTCGCCAAATCTTTCTTAGACAGAATGGGCCGTACAGTGGCAAAATTCCCAAATAATGTACCAGGCGTGGATTGGGCATACTCTGTGCTAAAGCGCCACAAAGAAAATTATAGCCAACGTGTTGCAGCTAACATAAAGCGGGCACGAGCGCAAGTTTCTAGAGAAACTATAAAAGAATACTTTCAAAATTTAGAGCCTACTATAAAAGACGTGCCGAGtagcaacatttttaattatgatgaGTCCAATTTAAGTGACGACCCTGGTAAAAAGCGATACATTTATCGAAGAGGGATAAAGTACCCTGAAAAAATAACTAACTTTTCTAAAAGTTCCACAAGTGTCATGATGTGTGGGTCTGCAGATGGAGTACTTTTACCGCCTTACGTCATTTATAAAAGCCTAATTAATGATGAAACgcctttttgttaa
- Protein Sequence
- MPRTYKKPLGSRNYKNYAESKLEDAVQAIANGSVSIRGAAEQFDIPYGTLYNRYHGKHIKKPGAQPVFSEAQEKAILQAAAKCADFGFPLSLLDLRMFAKSFLDRMGRTVAKFPNNVPGVDWAYSVLKRHKENYSQRVAANIKRARAQVSRETIKEYFQNLEPTIKDVPSSNIFNYDESNLSDDPGKKRYIYRRGIKYPEKITNFSKSSTSVMMCGSADGVLLPPYVIYKSLINDETPFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -