Acur001195.1
Basic Information
- Insect
- Aleochara curtula
- Gene Symbol
- -
- Assembly
- GCA_963978815.1
- Location
- OZ022215.1:14123956-14125831[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.85 85 3.8 2.8 1 23 126 148 126 148 0.95 2 12 4.5 4.5e+02 1.5 4.0 2 23 155 176 154 176 0.90 3 12 2.1e-05 0.0021 18.2 2.1 2 23 183 204 182 204 0.97 4 12 0.00011 0.011 16.0 1.6 1 23 292 315 292 315 0.97 5 12 0.088 8.8 6.9 0.0 3 20 323 340 321 342 0.91 6 12 0.00013 0.013 15.7 1.4 2 20 373 391 372 394 0.93 7 12 0.041 4.1 7.9 1.5 1 23 399 422 399 422 0.94 8 12 0.0091 0.91 10.0 0.5 1 23 428 451 428 451 0.94 9 12 6.5e-05 0.0065 16.7 2.1 1 23 460 482 460 482 0.98 10 12 1.6e-05 0.0016 18.7 1.0 3 23 490 510 488 510 0.96 11 12 1.9e-05 0.0019 18.4 0.2 1 23 516 539 516 539 0.96 12 12 0.00079 0.079 13.3 0.7 1 23 549 571 549 571 0.97
Sequence Information
- Coding Sequence
- ATGGAGCCTTCTGAATTTATTGTTGTGCAGCCATGCATTATAGAAGATCAGAATATGTTTAATGATGTGAAAGTATATGTAAATTCAGATGCTATGACTGAAGAATTTGTGGACAGTCAGGCACTACTTGAGACTGAGCAGGAATTACTAGAGAATGTATTGGAAGATTCAGATAcacatgaaataaatataaagctTGAAGATGTTGATGTTGGACCAGAGGTCATAATAACACCAAACTTTAATACAGCGAGTGATGAATGTGTTGCAGTGGAAGCATTGAGTCAGTTAAGCAACTCTTCAGAGAAACAATTTGTGGATAATATAGATCCTGATCTAAATGGGGGTGAAATTAATGAAGGAATGGAAAGGAATTATGCATGCCAGTTATGTCATTctaagtttaatttaaaaaaagtgTATTTAAAGCACTTAGTTTCTCATTCAATAAGTCGCCCGCATTCTTGTATTAATTGTGGGGCATTATTTCACCTGAAGAAGGATTTACATGAACACATGACAGTTCATGGCACCAATCATACCAGTTCATGTAGCTTTTGTAACAGATCATTTACCAGGACTTCAGCTTTTATAAACCATTTGAAGATGCACAATTCTACACAAGGAAGAGCAAAGAAACATGAGCAAATAAGTGCTGTTGAAACATTGGCAGAACTTTTAACTAGTGAACCTACAAATATACAAACTGTAGTTGTGAAAACTGAACCAGATATTAAACCAATTAAAGTTAaaccaattaaaattgaacCTGATATTAATTGGGTCATAGAAAACACTGAATCAATACATTGCACTGATAAAGCTGAACTCCCTGATCAACAAACTAATGGGCCTAAATTGAGTAAAGGGAAGTACAAATGTAACCACTGTTCCATATTATTTAAGCGAGAAACAGCACTTGTGAGTCATATAAGACTTAACCATCAACCAAGTGATGACCATTTATGTATGGATTGtgatatatatttttcttcGGCTGCCGTATTAGAGGAGCACTTGGAGCAGTGTTCCAAAAATAAGCAATCAATGAAAACTCCTTTCTCTGCGCCAAAAACATCTTCCTTTGATCCACAAGAAAGTTTTGATGAGTCTAAACAATGTAAGAAATGTGATAAACGTTTTGTAACAAAACAGAAACTTATGCAACATGTATGGGTACATCGTAAAAAAAGACACAAATGCAATGAATGTGAGCAATATTTTGATACAGTCAAAGCTCTGGATTATCATCGTTTAAATGATCATAAAACAAAAGGAAAATATGCGTGTATGGAATGTGGCATGAATTACTGTTCAAATCAAGGATTATCCGAGCATAAAGCAAGAGTTCATCAGAAGGGAAATGGCATGGTCATGTATTATTGTGAAGTATGTGATAAATCATTTAGTGGTCGGCAGggatttcatattcataaacgAATACATTCTGGGGAGCGTCCATATGGTTGCAAATATTGTACAAAAAGTTTTCGTGATGGGAGCACGCTACGACGACACGAACTTATTCATACAGGCGAACGACCGCATGTTTGCCCTGTTTGTCAAAAAGGGTTCATACAAAAAGTCGGTTTACGTGAGCACGTGCGATGGTTACATGCTGCAACATCAAACGCAAAGGGATTATTTACATGCTCAATCTGCCTTCAGAATTGTCCCAATCAAGACGAATTAACcgtgcatttgatatatcatAGTGATAAAATGGCGCGAGCATTTAAAGAGGACAAACCACTTCCTTAA
- Protein Sequence
- MEPSEFIVVQPCIIEDQNMFNDVKVYVNSDAMTEEFVDSQALLETEQELLENVLEDSDTHEINIKLEDVDVGPEVIITPNFNTASDECVAVEALSQLSNSSEKQFVDNIDPDLNGGEINEGMERNYACQLCHSKFNLKKVYLKHLVSHSISRPHSCINCGALFHLKKDLHEHMTVHGTNHTSSCSFCNRSFTRTSAFINHLKMHNSTQGRAKKHEQISAVETLAELLTSEPTNIQTVVVKTEPDIKPIKVKPIKIEPDINWVIENTESIHCTDKAELPDQQTNGPKLSKGKYKCNHCSILFKRETALVSHIRLNHQPSDDHLCMDCDIYFSSAAVLEEHLEQCSKNKQSMKTPFSAPKTSSFDPQESFDESKQCKKCDKRFVTKQKLMQHVWVHRKKRHKCNECEQYFDTVKALDYHRLNDHKTKGKYACMECGMNYCSNQGLSEHKARVHQKGNGMVMYYCEVCDKSFSGRQGFHIHKRIHSGERPYGCKYCTKSFRDGSTLRRHELIHTGERPHVCPVCQKGFIQKVGLREHVRWLHAATSNAKGLFTCSICLQNCPNQDELTVHLIYHSDKMARAFKEDKPLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -