Acur008181.1
Basic Information
- Insect
- Aleochara curtula
- Gene Symbol
- Prdm15
- Assembly
- GCA_963978815.1
- Location
- OZ022219.1:10889352-10892248[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.8 7.8e+02 0.7 0.2 2 9 221 228 220 242 0.67 2 13 0.001 0.1 12.9 1.6 2 23 250 272 249 272 0.93 3 13 0.00075 0.075 13.4 0.3 1 23 357 379 357 379 0.96 4 13 0.0013 0.13 12.6 1.8 2 20 384 402 384 404 0.93 5 13 9.3e-05 0.0093 16.2 1.5 2 23 413 435 412 435 0.93 6 13 0.011 1.1 9.7 3.2 1 19 439 458 439 460 0.96 7 13 6.1e-05 0.0062 16.8 1.8 1 23 473 495 473 495 0.99 8 13 4.4e-06 0.00045 20.4 2.1 1 23 506 528 506 528 0.98 9 13 4.5e-07 4.5e-05 23.5 1.5 1 23 533 555 533 555 0.97 10 13 0.00027 0.027 14.7 2.4 1 23 561 583 561 583 0.96 11 13 2.1e-05 0.0021 18.3 6.2 1 23 589 612 589 612 0.96 12 13 0.0001 0.01 16.1 0.7 2 23 615 637 614 637 0.96 13 13 0.00028 0.028 14.7 0.8 1 23 642 665 642 665 0.96
Sequence Information
- Coding Sequence
- ATGGATCACACATCGTCATTGTTTAATGGTGTGGACGAAAAAACACAGAATGATGCCCCAGAGTACCCATTATGTGGAATCTGTGGTGAGCCACATGAATCATCTGACTGTGATATTGTTTGCTTAAAAACGACAATAAGAGACACACCAGTATTATCTAAAGCACGGCTCTCGTTACCTTCTAATTTACAATTGGTTATAATGGCTGATGGCACCAATTCTATCATTACCAATCAAGTGATAGAAAAGGGCACCAGATTTGGCCCATATGAAGCTAAAGAGCAGTTTACTATCTCACCTAGCGTTGATTTACCATTAAAAGTGTTCAAAGATGCTGAGGATAACTATTTTAAAGAATATTACTTGAACAATACCAATGAATTTGAGTGTAACTGGATGTACTTTGTAAACAAGGCCAACAACTTAGATGAGCAGAACCTGATTTGTTTCCAGGATAAGGGAAGGATTTATTACATATCTGTTAGGGACATTCAGAGAGGAGAGCATTTACATGTCTGGTATGCACCTTACTATGGGAAGCTAATGAAAATGGGTTCCTATTATGATAAAGTACAAAGTGAAGATGATTCTTCCCAAAGCAATATTGatgttaatgaattaatgaagaaGCAACATAATATTAGAGATAGGAAAACATGGATATGCAAGTTTTGTGGGAAACAGGAAGAAAACATACAAAAGTTTGCAATACATATTACAGATCATTATACTGCACAGCTTAGGAAAACTTGCGAAATTTGCAAACAACGTTTTTTCACTGTTCAGAGTTTGAAGAAACATATGTTTCTTGCTCATAATGAAACAGCCACACAAAGCAAAAGTCCAATTGAAGTACAAAATAAAGAGTCAATTGATACAGATCAAGAAAACCTTTTTGGTCCTTTGTTGAACGAAGTGCCCACTGAAAGTAATGTGCTGTTTGAGCATTTAAACTTTCAGGACACGTCATCAATGCAAAGTGAAACAATGACATTAAACGTGGACAATATTTTAAACGAGgatgaaaatttcaactttgaaatgCCAAAGGATATGGACAAGGATAAGTTCGTATGCGATATATGCCTCAAGAAGTTTGTTCGTCTTAAGTTTCTAATTATTCATCTGAGTGCGCATACGGGGAAGAACACATGTAAGCAATGCTTGACTGTGTTTACTCGCAAGGAGAATTTGATGGCGCATAAATGCCTTAGTTGTACGACTACAACCGATATAAAATGCACGATATGTGCAAAGCGTTTTACGCTTAGCAAATATCTTAGGCGGCATATGATTTTTACGCACGGACAGGGTTTTACATGTACCAAACAATGTAAGCGAAAGTTTGCGACGCAGAAAACTTTAGAAGCGCATAATTGCGAGCAGCCAAAGGACGGACCAACCGGCGACAATGCATTTACGTGCCAGTTGTGCGCGAAAAAGTTTGGAAACGGTCGCAATCTTCGGCGTCATTTGAAGACGCACGAAAACAATAGTACAAATGTGACAAATGTTTATATATGCGAAGTATGttcaaaacaatttaaaagtaAGAAGAGTTTGAAACAACACTTGAATTCCCACAAGGAGCCGGAGTTTTCGTGTAAATTATGCGATAAGACGTTTACGCGACGATCAGCGTTTACGGAACACATGGATATTCATAAAAACGAGACGCCGCACGTTTGTAACATATGTAATGCAAAGTTTACTCTTAAGAAATATCTCACAAATCATCAACTTTTGCACACGGACGAGTTAAAGTTTAAATGCAACGAGTGTCCGCAACGATTTCGGCACAAAGTTAATTTAACGAAGCACCATAATAATTCGCACGTGAAAACATGCAAAGAGTGTTCGAAAAACTTTAGTACGGTGGACGAGTACAAAAATCATTTGCTAGTGGCACATATGGAAAAAGTGTATGAATGTCCAGTGTGTAAAATACGTGTCAAGTTGCGCAGTTCGCTGAAGCGGCATGTAAAGCAGAAACACGCTCAGGACGACTTTGATATCTCAAAGTTGGACGAGTACATTAGCGAAAATGCATCGAAGGATGCGAAAACGGCACAGGGTAAAAGCAATTTCATTGTGGACAGTCCTTCAACGTCTGAGGGAGTTCCTGGTCTTGTGCCAGTTAGCAGTTCCAGCGCGGATGTGAGAATTCGAGGAGCTTCCCAGAGCGTTCCAGTACAAACGAGAGACGACGTTCTCAAACTTAAAGTGCCACCTGATGACATGCTTAATCAGTGTCTGCTGCCAGACAGTTTGCAAGTGAATGTAATGCAAGACCTGGAGAGTAATCTCCAGCTGGATGATATTGTTAATGTTCTTGGAGGCAAGCCGGGTGAAAGCAATGAAAACGTTTTGGATTATGGTAATATTGCAATGGATTTTGATAATAGCTACGTGAAGCAGGGAATGACAAGCCAAGCAGATGTTGGTATTACGCATTCGTTCGATAATGGCACTGTGTGCCTATCGATGCCGGAACTGAATGAACATGGCCAACCCGTCAGCTTGGGTGATAATCTGCATTCGTCGCTCATCTTGGAAAACGTATGCTTAAATGATGGACAAGAACCTGTCGTATTGTATATCCTGGATCAGAAACCAAGTTAG
- Protein Sequence
- MDHTSSLFNGVDEKTQNDAPEYPLCGICGEPHESSDCDIVCLKTTIRDTPVLSKARLSLPSNLQLVIMADGTNSIITNQVIEKGTRFGPYEAKEQFTISPSVDLPLKVFKDAEDNYFKEYYLNNTNEFECNWMYFVNKANNLDEQNLICFQDKGRIYYISVRDIQRGEHLHVWYAPYYGKLMKMGSYYDKVQSEDDSSQSNIDVNELMKKQHNIRDRKTWICKFCGKQEENIQKFAIHITDHYTAQLRKTCEICKQRFFTVQSLKKHMFLAHNETATQSKSPIEVQNKESIDTDQENLFGPLLNEVPTESNVLFEHLNFQDTSSMQSETMTLNVDNILNEDENFNFEMPKDMDKDKFVCDICLKKFVRLKFLIIHLSAHTGKNTCKQCLTVFTRKENLMAHKCLSCTTTTDIKCTICAKRFTLSKYLRRHMIFTHGQGFTCTKQCKRKFATQKTLEAHNCEQPKDGPTGDNAFTCQLCAKKFGNGRNLRRHLKTHENNSTNVTNVYICEVCSKQFKSKKSLKQHLNSHKEPEFSCKLCDKTFTRRSAFTEHMDIHKNETPHVCNICNAKFTLKKYLTNHQLLHTDELKFKCNECPQRFRHKVNLTKHHNNSHVKTCKECSKNFSTVDEYKNHLLVAHMEKVYECPVCKIRVKLRSSLKRHVKQKHAQDDFDISKLDEYISENASKDAKTAQGKSNFIVDSPSTSEGVPGLVPVSSSSADVRIRGASQSVPVQTRDDVLKLKVPPDDMLNQCLLPDSLQVNVMQDLESNLQLDDIVNVLGGKPGESNENVLDYGNIAMDFDNSYVKQGMTSQADVGITHSFDNGTVCLSMPELNEHGQPVSLGDNLHSSLILENVCLNDGQEPVVLYILDQKPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00084065;
- 90% Identity
- iTF_00084065;
- 80% Identity
- -