Acur008140.1
Basic Information
- Insect
- Aleochara curtula
- Gene Symbol
- -
- Assembly
- GCA_963978815.1
- Location
- OZ022219.1:10506657-10509002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00012 0.012 15.9 1.6 1 23 171 194 171 194 0.96 2 13 1.6e-07 1.6e-05 24.9 3.3 1 23 200 222 200 222 0.98 3 13 2e-05 0.002 18.3 0.5 1 21 228 248 228 249 0.94 4 13 1.6e-05 0.0016 18.6 0.1 1 23 256 278 256 278 0.98 5 13 0.044 4.4 7.8 0.0 1 23 395 418 395 418 0.92 6 13 2.4e-06 0.00024 21.2 1.5 2 23 425 446 424 446 0.97 7 13 1.5e-05 0.0015 18.8 3.7 1 23 468 490 468 490 0.98 8 13 4.2e-09 4.3e-07 29.9 1.6 1 23 496 518 496 518 0.97 9 13 8.2e-07 8.3e-05 22.7 0.5 1 23 525 547 525 547 0.96 10 13 2.3e-06 0.00023 21.3 1.6 1 23 553 575 553 575 0.98 11 13 2.3e-08 2.3e-06 27.6 2.0 3 23 583 603 581 603 0.96 12 13 9.5e-06 0.00095 19.3 1.2 1 23 609 631 609 631 0.99 13 13 0.15 15 6.1 1.5 1 23 636 659 636 659 0.96
Sequence Information
- Coding Sequence
- ATGGagagcaataaaataaacttgGATGAACTTTGTCGATGCTGTAAACAGATTTCAAGTGATCTCGTGTTTATATacgaagaaaataattctGATCCCGAGTATCCCCGCATTGACGAGATGATAATGAGTTGCACCTCAGTTACCGCCCATCGAGGAGATGGTTTACCATCGCATTTATGCATACAATGTTTGGATCGTTTAAAAATCGGCTTCGCAATTCGTCGTGATTTTGAACAAGCTGATAGCGAATTGCGCATTCACGTAAGAACGCAACAAGCCACTACAAATGCTGAATTAATGAGTGGTATTTTGCATGACTTTTTTGATAATGATTTGCAAGAAGCTGCTGAAGAGTTGAGTACGTTCAAGAAAGAACCCGACGAATCAACAACGAATGATGTTAATATGCATGATCCAACTATGGATGAAACAACTGATGACTGCAACCTTCAAGTGGACTCAGAAATTAGTGAAAATGTTCAAAAGTTGCGAAAACTTTCTAGAGTTTTTGCATGCACGATATGTTCTACTGATTATAATTCACAGAAGAGTCTAAGAAAACATTTACAACGAAATCACACGTCCACTGTAAGCTACAGGTGTAAAATATGCCAAAAAGTATTCAGACGCGCTGAGCATTTAAAACGACATCTTTACATACATCTCAAGGAACGACCATTTGTCTGTGATAAATGTAAACGTACTTTTAACAGACAGGAACATTTAGATAGTCATATAATAATCTGCGATggcaaaaatactttttcatgTGATGTGTGCAATAAAGGATTTGCTTCAGAGATTGCTTTGACTGTACATCGAAGAATTCACGAGGATGTTGAAGTGAAATCGCATTGTTGTTTGGAAATGGCCGACTTGGAAAACTATGGACAATACTGCGAAAGAATTGATTCGTTAAACGAAAATGTAGACTTTGAAGAATCTTCGGTCGTAGTGATCAAGGAAGAATTTCTAGAAGGTGCCATCAATAATGATGCGGAGTTTGTTCATAATTCAGATGATGCAGGCAGTGATTACATGGAGGAAATAAAGAAGAAACGAGGGAGGAAACGGAAGAAGAAACGTGTAATTACTACAGGAAAGAAACGAGGAAGACctccaaagaataaaaatgTGAATAGTCAACTAGCTCAAGAAACAGAGGAAGATATTGGATCATTTGAATGTCCTATTTGTTTCATTGTTCTTCCACGTCTTACATTATTAGAATTACACGGCCAAGAATCGCACCGAGATGATCATGTTTTAAGATGTAATGAATGTGCTAAATCTTTTGCGCGCATTTATACATTGAAACGCCATCAAAAAACGCATCAAGCAGAAGaaacaatcataaataatgaagaaattgattgcAATTCAACTCAATCGCCGTCGTTCTCTTGTCATATATGCTTAAAAACATTTACgctaagtaaatatttacaagcaCATTTGAAAACACATAACCGAGAGAAGACTTTCATATGTCCTAAATGCGGgaaaacattttcatcaaAGTCTAATTTAACAGAGCATATGAAGTTCCACAGTGATCACGAAAAGAAGTTTCTGTGTTCTGAATGTGGACAACGctttattaggaatgattatcTTGTGATACACATGCGTCGTCATCGGGGTGAAAAaccattcaaatgcaaatattgtaATCGAGGGTTTCCCCGATCTACTGACTTGACTGTTCATGAACGATATCATACAGGAGTCAAGACTCATTTGTGTACCATTTGTGGACGTGGTTTTAGTCGGTCTTATAATCTAACCGTCCATATGCGAACGCACACTGGAGAAAAGCCTTATAAATGTCCATATTGTGAATCGGCTTTCGCGCAATGTAATGATCTTAAAGCACATGTCAGGCGTCATACAGGCGAACGATTTCATTGCGATCTATGCTCGGAGACATTCTTAATGGGTTATGCATTAACTCAACATAAACGAACCATTCATGGCCTTAATGTTGTTGCCAATATTCGTCGACTACCGCCGATTGAATCTCTTAGTCAAGAGGCACAATCTGAATCAATAACTCTACCtcaagtaataataacttcTTCGCTGGAATCGAATATTAATGCAGCATAA
- Protein Sequence
- MESNKINLDELCRCCKQISSDLVFIYEENNSDPEYPRIDEMIMSCTSVTAHRGDGLPSHLCIQCLDRLKIGFAIRRDFEQADSELRIHVRTQQATTNAELMSGILHDFFDNDLQEAAEELSTFKKEPDESTTNDVNMHDPTMDETTDDCNLQVDSEISENVQKLRKLSRVFACTICSTDYNSQKSLRKHLQRNHTSTVSYRCKICQKVFRRAEHLKRHLYIHLKERPFVCDKCKRTFNRQEHLDSHIIICDGKNTFSCDVCNKGFASEIALTVHRRIHEDVEVKSHCCLEMADLENYGQYCERIDSLNENVDFEESSVVVIKEEFLEGAINNDAEFVHNSDDAGSDYMEEIKKKRGRKRKKKRVITTGKKRGRPPKNKNVNSQLAQETEEDIGSFECPICFIVLPRLTLLELHGQESHRDDHVLRCNECAKSFARIYTLKRHQKTHQAEETIINNEEIDCNSTQSPSFSCHICLKTFTLSKYLQAHLKTHNREKTFICPKCGKTFSSKSNLTEHMKFHSDHEKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCNRGFPRSTDLTVHERYHTGVKTHLCTICGRGFSRSYNLTVHMRTHTGEKPYKCPYCESAFAQCNDLKAHVRRHTGERFHCDLCSETFLMGYALTQHKRTIHGLNVVANIRRLPPIESLSQEAQSESITLPQVIITSSLESNINAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00084040;
- 90% Identity
- -
- 80% Identity
- -