Basic Information

Gene Symbol
nfxl1
Assembly
GCA_003054995.1
Location
NBZA01005424.1:35729-39759[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2 1.7e+04 -8.2 5.6 15 19 150 154 149 154 0.81
2 20 0.61 5.3e+03 -2.5 1.1 4 10 185 191 185 193 0.83
3 20 4e-08 0.00035 20.5 17.0 1 19 199 216 199 216 0.99
4 20 1.4 1.2e+04 -3.6 1.2 8 13 221 226 220 226 0.75
5 20 0.011 96 3.1 15.1 3 19 254 270 242 270 0.91
6 20 0.75 6.5e+03 -2.8 0.9 5 10 294 299 294 299 0.94
7 20 1.2e-08 0.0001 22.2 11.4 1 19 305 323 305 323 0.98
8 20 9.5e-05 0.82 9.7 13.6 3 18 360 375 348 376 0.85
9 20 2.2e-06 0.019 14.9 16.1 1 18 410 427 410 428 0.94
10 20 4.5e-06 0.038 14.0 15.3 3 19 439 455 431 455 0.85
11 20 2 1.7e+04 -4.9 2.5 8 11 492 495 488 496 0.81
12 20 0.00024 2.1 8.4 6.4 9 18 503 512 500 513 0.89
13 20 0.0089 77 3.4 6.1 1 12 523 533 523 533 0.90
14 20 0.38 3.3e+03 -1.8 2.6 15 19 562 566 561 566 0.88
15 20 0.055 4.7e+02 0.9 4.7 1 11 602 612 596 613 0.82
16 20 0.74 6.4e+03 -2.7 1.5 14 18 626 630 626 631 0.84
17 20 3.6e-05 0.31 11.0 17.1 3 19 643 659 642 659 0.91
18 20 2 1.7e+04 -7.0 3.4 9 13 665 669 665 669 0.71
19 20 2.6e-05 0.22 11.5 10.0 1 16 702 716 702 721 0.88
20 20 1.7 1.5e+04 -3.9 1.4 6 10 751 755 751 755 0.97

Sequence Information

Coding Sequence
ATGGGCGATAACAATAAGAATCCGTGGaataaaaagacaaaaaataacaatttacaaCGGACTGAACAGAAATTCAAGGAAGCACAAGTCAAGCTAGCAGAAGCTGTTAAAAAACATGCTATTAATTGCGAATCTTCAGAAGAGGAAGATGAACTTCCGAAGGAGGACATTATTAGTGaacttcttaagaaatatGCACAGAATGGCAATGATGTGGATCTTGGTAGAaccaataatttcattaatgaTGCATTTCAAACCGGGGCAAATACTTGccttatttgcatttcatcgATTAAAAGAACTGAATCTATTTGGAGCTGTAAATCTTGCTACTGCTGTTTCCATCTAATGTGTATTCAAAGATGGTCTAAAGATACCGTAACTCAGCAGAAAGAAGCATTAAATGCTCAAGTACAATACAGAAGGATTTCTCTCCGGTGGTGTTGTCCCAAATGCAGAAGTGAATATGAGCCTGACTATATTCCTCAAGACTACTATTGCTTTTGTCAAAAAGTAAAGAATCCTATATTCCAGCCTATGATAGTTCCACATAGTTGTGGTAACACTTGTGAAAAACCTCTACAACCACTATGTGGTCATAAGTGTCTATTGCTGTGCCACCCAGGACCATGTCCACCTTGTCCTAAAATGGTGAAAAATACCTGTCATTGTGGTACGTCAGAACCGAAATTAGTGCGTTGTATTAGGAAAGAATGGAGTTGCGGAGGTCAGTGTAATAAGCGTCTAAACTGCAAGAAACATAAATGCTTAGATATTTGTCACGGTGATGATTGTCGCTCATGTCCAAAGAAAACTATGCGTAAATGCGTTTGCGGAGCTAAAACAAAGCTCTGCGATTGTATTGCGCCAGCATGGAAATGTGACAAAGTCTGTGGAAAAAAATTATCTTGTGGGTTTCATAACTGTGAACAAGTATGTCATGCTGGTTCTTGTGGCGATTGCCCACGTTCTAAGCAACGCACATGTCCATGCGGAAAATCGGTCTATCAATTGGAATGCATTAAAGAAGTCCCGACGTGCGGAGATACATGTGGAAAAACACTTGACTGTAAGATGCATATGTGTTATGAACGTTGTCACAAAGGAAGTTGCCCAGTTtgtTTGGAAACAGTTCATAAAAATTGTAGGTGTGGCCTACACAGTAAGGATATTCAATGCggcaaagtttatttatgcgACACGAAATGTAAGAAATTTCGCGACTGCAATAAGCATACATGTAATAGAAAATGCTGTGACGGGAATTGTCCACCGTGTGAGAAACCTTGTGGAAAAACTCTTAGCTGCAAGAAACACCCTTGTCCATCAGTGTGTCACCGAGGACCTTGTTATCCTTGTACTTTAACTGAAACTGTCTCATGTTTTTGCGGTGCAACAACTCTAGATGTACCTTGCGGtcgaaaatcaaaaacaaaatcacCAAAGTGTGGAATGGAATGCGAAAAAAAGTCAGTTTGTCATCATCCAAATGACGGTCGCCACAAATGCCATTTTGGAGATTGTCCTCCGTGTAATAAAGTTTGTGATAAAGCATTGCAAGATTGCAGTCATAGGTGTATGGAACGATGTCATGAATCAGTTCTTGTGAAGATCCCCGCAGCTCGAGCAGCGGTACCATGGGAGGCAAAGCCACCAGTCTTTGAGAAGCGTTCTCTTTTGTGTCCACCGTGTAAAGTACCATCTCCCATAATATGCTTTGGTGGTCACGAAACATTCTATTTACCATGTAATGAAATAAGACCTTTAAGTTGTCATCGTCCATGCGGACGCATGTTACAATGCATGAATCACACTTGTGTTTTGGAATGCCACATTGTCAAGAATGCAAAGGATGGAGCATCAGCTGGCAGTAATTGTGAGCCGTGTAATGGAGAATGTACTAAACCGCGGGTCGAAGGATGCACTCACGTTTGTCCTGAACCTTGTCATGGTGGCGATTGTCCACCTTGTACAATCTTGACACGTGTTCCTTGTCATTGTGGGTTAACGCAACAGTATATTAGTTGCGCAGAATGGACGTCGACCGTAGATAAAGAACAATTGCAAAGTTGTGGAAATCAATGCCCGCTTAAGCTGCCTTGTGGACACCGCTGTCGTGCAAATTGTCACTCGGGAATATGCCCTGCTAACGATTgcaagaaaaaagtaaaaatctATTGCAAGTGTaaatttttaagaaaagaaTTTACATGTGACGTTGTCCGCAGCGGGAAAGCGCTTGTTTTATGCGAGTCAGTTTGCGAAGAAAAGAATCTGCAAGAAATGAGTGAGCAGTTCTTGAAGAGTCAATTGGAAGAACAACTCATACAGGAAAAAAATAAGCGAGAATTAGAGGAGTatgaaaagaaatttaataaaccaAAAAAACGTGATAAAAAAGTAGCGAAAGAGATCACAACGCAAAATACTACATggagaaatttatttattgcgtgcATTATCCTGGCTGTAGCTGTTCTTGGgAGAAGACATTCAACTGTAGATGAGAAGAGGTGTATTACTGAAGTATTTAAAGATGTACCCAATATTAATACTGAAGAGCCTATGGATGTTACtccaattaaaacaaaacacaagaaacCGTATGCAAACAAACTTATGTTATCTGAATGGTTGATTGAAACACCAGAAGATTTAGAATCCATGTGGCTTATGAAGATTTGTCCTAAAGGTGTAAGAAATCTTGTTGTAGCACATaaggcaaaaacaaaatgctaCAAGAAGAGTGGGTATTTAGTGTCGGAGTTCCACTCACAATTGCCCGGCGGTAGTCCTTCAAGCTATCCGGCAAAGTTTACGATATTGGATTGCATTTTCAGTGAGGAAACAGGAGTATTTTTTGTTCTAGATGTCTTAGTGTGGAATTCCTTTTCAGTCAAAAACAGCCCTACTGATTTCCGATTTTTCTTTCTGCAATCAAAATTACTCGAAGCGCCATTATTGCAAGAAATACACGCGGAGAATCagtataaatttatatatttgccGCACAAATCAGCGGAGTTTCCAATAATTGAAGCggaatttacaaattttaacGATCAGGTTGACGGCGTGTTATTTTACCACATTGAAATATGTTATCTTTCTGAAGTTTCGCCATTGGTTGGATGGTTAAAGATATTTATGCTACCGGAAGTTTTAGCCATACCAGTACACAATGATTACTTACTAGAGCGGCCTATAGATTACACAAACATATTGGACTATtcaaaaacatttgaaaaacaGCGACGCAAACATAAGAAAAAACGCATTGAAGATGTTGAAATGATTGATGAAGAAGGTTAg
Protein Sequence
MGDNNKNPWNKKTKNNNLQRTEQKFKEAQVKLAEAVKKHAINCESSEEEDELPKEDIISELLKKYAQNGNDVDLGRTNNFINDAFQTGANTCLICISSIKRTESIWSCKSCYCCFHLMCIQRWSKDTVTQQKEALNAQVQYRRISLRWCCPKCRSEYEPDYIPQDYYCFCQKVKNPIFQPMIVPHSCGNTCEKPLQPLCGHKCLLLCHPGPCPPCPKMVKNTCHCGTSEPKLVRCIRKEWSCGGQCNKRLNCKKHKCLDICHGDDCRSCPKKTMRKCVCGAKTKLCDCIAPAWKCDKVCGKKLSCGFHNCEQVCHAGSCGDCPRSKQRTCPCGKSVYQLECIKEVPTCGDTCGKTLDCKMHMCYERCHKGSCPVCLETVHKNCRCGLHSKDIQCGKVYLCDTKCKKFRDCNKHTCNRKCCDGNCPPCEKPCGKTLSCKKHPCPSVCHRGPCYPCTLTETVSCFCGATTLDVPCGRKSKTKSPKCGMECEKKSVCHHPNDGRHKCHFGDCPPCNKVCDKALQDCSHRCMERCHESVLVKIPAARAAVPWEAKPPVFEKRSLLCPPCKVPSPIICFGGHETFYLPCNEIRPLSCHRPCGRMLQCMNHTCVLECHIVKNAKDGASAGSNCEPCNGECTKPRVEGCTHVCPEPCHGGDCPPCTILTRVPCHCGLTQQYISCAEWTSTVDKEQLQSCGNQCPLKLPCGHRCRANCHSGICPANDCKKKVKIYCKCKFLRKEFTCDVVRSGKALVLCESVCEEKNLQEMSEQFLKSQLEEQLIQEKNKRELEEYEKKFNKPKKRDKKVAKEITTQNTTWRNLFIACIILAVAVLGRRHSTVDEKRCITEVFKDVPNINTEEPMDVTPIKTKHKKPYANKLMLSEWLIETPEDLESMWLMKICPKGVRNLVVAHKAKTKCYKKSGYLVSEFHSQLPGGSPSSYPAKFTILDCIFSEETGVFFVLDVLVWNSFSVKNSPTDFRFFFLQSKLLEAPLLQEIHAENQYKFIYLPHKSAEFPIIEAEFTNFNDQVDGVLFYHIEICYLSEVSPLVGWLKIFMLPEVLAIPVHNDYLLERPIDYTNILDYSKTFEKQRRKHKKKRIEDVEMIDEEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-