Abil005753.1
Basic Information
- Insect
- Aleochara bilineata
- Gene Symbol
- RREB1
- Assembly
- GCA_003054995.1
- Location
- NBZA01002860.1:81570-86700[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 9.1e-05 0.011 16.1 1.5 1 23 79 101 79 101 0.99 2 16 0.0014 0.16 12.4 0.2 1 23 115 137 115 137 0.98 3 16 3e-06 0.00035 20.8 4.3 1 23 143 165 143 165 0.99 4 16 0.019 2.2 8.9 0.3 1 23 248 272 248 272 0.86 5 16 0.0045 0.52 10.8 2.6 2 23 278 300 278 300 0.97 6 16 2.6 3e+02 2.1 1.3 1 19 348 366 348 368 0.78 7 16 0.017 2 9.0 0.2 1 23 506 528 506 528 0.98 8 16 0.0013 0.15 12.5 0.2 1 23 537 559 537 559 0.98 9 16 0.00012 0.014 15.8 2.8 1 23 565 588 565 588 0.97 10 16 0.001 0.12 12.9 2.1 1 23 941 964 941 964 0.96 11 16 0.00046 0.053 13.9 0.5 3 23 1211 1231 1210 1231 0.98 12 16 0.066 7.7 7.1 6.3 1 23 1237 1260 1237 1260 0.97 13 16 0.046 5.3 7.7 3.1 1 23 1286 1310 1286 1310 0.94 14 16 1.6 1.8e+02 2.8 3.6 1 23 1370 1393 1370 1393 0.89 15 16 0.0087 1 9.9 0.4 3 23 1441 1461 1439 1461 0.93 16 16 0.0039 0.46 11.0 5.9 1 23 1467 1489 1467 1489 0.98
Sequence Information
- Coding Sequence
- ATGCAAGGTGTACTCTGCTTACCTCCAGGACAATTGGATCGCAGCTTACCAAACAAAGTCGACGAGATGGAAATGCCGTCGGCGAGCGAACCGCGGAAGGAAATCACGGTTCCTAATCAGTCTGACTCCTCGGGCGTCTTCTCCGCCACGTCCAACTCCACGGAGACCTTGGACGAAGCGCGCGAGCACTCGGACGCGAGATCTGAATGCAGCACGCCGGAGGAACGCAAGGTGTACGTGTGCCCCATCTGCAAGCGCACCCTCAGCGAGCGACACGAGTTCACGCTCCACATCCGGTCGCACAACAACGACGCCGACGCCCACCAGGACCCTGACAAAGGGTACGTGTGTCGCATTTGCGCCAAGGTCCTGTGCTCCGCGTCCAGCTTGGACCGACACGTGCTGGTCCACACCGGCGAGCGCCCGTTCACCTGCAAGTACTGCGGGGACACCTTCACCACCAACGGCAACATGCATCGCCACATGCGCACCCACAAGTTCGACAACAACTACGAATCCGACGGCAGCGTCGATAGCAATGCCAGCAGCGGGATTGCCACCACCCCGACCAGGAGTGCCAACAAGAGCGTGGagttcaacaacaacaagttaGATTACAACAGTAACAAGCGGAAACACGAAGGGGCAGATGACTCGGCGCTTGTGGAGGACGAAGATAAAGATAGCAGTGGCCCCGAGGATGAGGTGGTGCACCGACGCAAAAAGCCGCTTTTAGAGTGGTACAAGTGCCCGATTTGTAACCGCAGCGACTTCAGCTCTAGGAAATCTTTGGAGGTGCATGTGGAGGATAATCATCCAGATTACCCAGCCAAGTGCCACCAGTGTGAGCAGGTTTTCCCCAACCAGAAGCGacttaattatcataaattgaCCGTCCATGCCGACGACGCTCCAAAGAAGAAGATCGTGGATGGGTTTAAACACCTAGATTATGTAGATTTCAGCAGCGATAAGTTCCCCACAATCGCCCGGCATGAATGCGAAATGGTTTTCCATCGAGCCCCACAGGCAGGACCCAAATACATCTGCGATAAGTGCACAAGAGCTTTCCCTTGTGACAAGTCTCTGGAAAGTCATTCCAAGGAGTGTGGTGCTCCATCAGAAGCCGATCGTGTGTCAGATCTTTTACGCACTCGCAAACAACTGCTGGATATCCAGCGCGTTGCTGAAAATATAAAGCGCGAGGAGTTTTTCCATCACTTGGATCTAGAAGACACTAGTCCCAAGAAACACCAGAAAGATGCATCCCCCGTACGTCCATTGGTCCCGCCGATTCTCAAAATGGACTGCTCCAAGGACCTTGCAGATATTCAATCGATTATTTCCATGACCAATGGCAGTTTGCAATTCCAGCAATTCCACAATTCGGGGAAGCAAACTTCAATATCTTCAATGGACTCCTCACAAACGCTCAATGAGCCGGAAAAGACTGAAGAGGAAGAGACTCAAGACCAGTTCGCCCAGGAATTCCGCAAGATGAAGCTGCGCGGCGAGTTTCCCTGCAGGCTCTGCACCGCGATTTTCCCCAACTTGCGCGCGCTCAAAGGGCATAACCGTACGCACTTGAATAGCCCCATTAACGGCAGCTTCAGATGCAACATGTGCCCTCATGTCGCAGTGGACAAGGCAGGTGTCATCCGGCACATGCGCAACCATAACGGCGACCGGCCCTACGAATGCTCCATCTGTAACTATGCATTCACCACGAAGGCAAATTGCGAGCGACACTTACGTAACCGCCATCAGAAGACCACTCGGGATCAAGTGAAACTAGCCATTATTTATCATCCCTCCGAGGATCCGACCAACGATGAAATCACCAGGTCTCTGGACACCTCCAAGAAGCTCAACACTAGTCTAGACTCAAACACGGCATCGAATGACTCCTGCGCCAGGAGCTCCACGCCCAAGGGGATTCCACCAGCGTTCCCTGATCTGTTCCCACTCACATCGAAAATGCACAATGTGAATGACCTTTTGCTCGCTGCTGCAACTGAACGAGAACCGGTGAGAGACGACTGGCGGGAAGCAACGCAACAATTTGCGACTTCAACTCCGCTTAAAACCACAGCAACGCCTAGTATTCGCGTGAAGGATGTAAACGCTTTGAAGGAAATTCCGGAGGCTTCGTCTTTCTCCGACGGTGAGGATAGTGTGCCCATGGATTTGAGCAAAAAGACTCCGCGTCCTTCAGAAGGCGGTTCTGAGTCTGACAGCAATGCAATTAACGCGAAGCCTGAAGTTGGTCACTTCCCAATGGCTGAGATTCTAAGCCAACAATTGCTGAAGAGTTCGCCCGTCGCAGATCCAGCCGTCTCTGCGTTCTTTGCCACGCAACTTGCATTTTACAGAAATAGCATGCCGAATATGTTTCCTGGGTTCCCATTCAACCCGATGCTGATGCCTCCCTTGCTTCCGGAGGCCGCAATGACGCCTGAAATGAAGGAACGCTTGCAGCAACTCAACGGTGCAAACGCTTTGAAGAACATGATCTTTCCAGGAGCGGTTCCAGGGTACCCTTCTGCGCTTTTCAGCGATATAAAAGCCGCTGCAGTGGCTGCTTCTGAAGGCAAAACTCCTGAAGAGATGAAGCCTCTTTCATTAAATGTGGATGTGAATTTCCCCGATGGCGCCAGTAATACTTTCAACAACATGCACATGAAGGGCAGTGCAGGGTCCAGCCCAGTATTGTCACAGTCCAAGGCTGAATTACAGTCGCCAAACTCAGTCAAAATGGTCATCAAGAACGGGGTGCTCATGCCCAAGCAAAAGCAACGACGCTACCGCACCGAACGGCCATTCTCTTGCGAACATTGTGCTGCAAGATTCACACTGAGATCGAACATGGAGCGGCATATCAAGCAACAACATCCGCAATACTGGTCGCAACGTCAGCGCTCTGCCTCTGGTCTCTCCACACCTGGGAGGAAACCACTCGCTCAGAGCAGCCCCTCACTGAAAAATCCAATTTCCGGATGTGAGCTTAGCATTCCCATGTACGAAGCCTCAAAAGTTCAGCAAGATACCAACAAATCGGAAGTGACAGAGAAGCTTAGGTTTGCAATCCTCACACAGCATTTACGGGCGGCGAcatcgaatgcgaatgaatcTCAACAAATGCAGCAGGCTTTAGTGAATTGCAAGAAAGAAGAGCCGTCTGTAGATGAAGATGACGCGTTGGTTATTGCCGAAGAGGACGATGAAAACGATCAGGATGCtgaagagcaagcgcaagagcaagaaaagGAGAAACAGCGAGAGCAACCCATAAGAACGCGTATTTTGGAGGAAAAACTGAAAGAGTTACGTAACAAGCAGTTGTCTAAGGATAATACTATCGCAAAGAAGAACGAAGACGCTGACTTGGTGTCCGTTTCGCGATTGCTGAATAACGCTTCTCAGCCTTTGAACGACTTCCGGGAGTATTTCCGTCCCGAACAAGAAGAACCAGAAGCTGCGAGCGAAGAAGACGAGGAAGGATTGGTTGCCAGTGGCAGTACAAGTGATGGAAACTCTGGCACAGATGAAAATAGATCTGAAAATGATGCTGCTGCGAATCCGCCTGTGAAGAAGAAATCTGCGTATTCCCTTGCGCCCAACCGCGTTGACTGTCCGTATTGCAGTCGCAAATTTCCATGGACATCTTCACTGCGTCGCCATATTCTTACGCATACAGGGCAGAAGCCGTTCAAGTGCAGCCACTGCCCGCTACTCTTCACAACCAAGTCTAACTGTGATCGGCATTTGCTGCGCAAGCACGGGAATTCAGCGACGACCATCAGCAATGACCAGGCCAGTAACAACTACATGCTGCGGAACGTCCCCGAGCGGCCGTACAAGTGCTCCAGCTGCCCTTCAAGTACTTTCTCGACATTCTCAAATCTGACTAAACACAGAACGTCAAAACATGgcccacaagacgatcgcCAAGGGGGATATGAAGCTGGTAGCTCTGAAGATGAGAAGAACAACAGCGACTCGATCGTTACCAACCAGAAGTCTTCTGACTGGGAAGCTCCAGTCAAGATGCTTGCTGGGATGATCCCATCCGAGAGTACCGCGTCTCCTGCGAACTCCGATCTTCCCTTCAAGTGTCACCTCTGCGACAACTCATTCGGCGAGCGCCAGGAATGTCTTGAGCATATCCGAGACAAGCACGCCTCGGAATATGACCTCCTCATGAGCAAAAATGCTCTGGATCCTAACGCCACCACGCCGGAAGAAGGCAACAACCATGATGAAGACGACGGAGAGACAATCCGCGGCAAGTTTCCGGATTATTCAAATCGGAAAGTCATATGCGCCTTCTGCATGCGCCGATTTTGGTCGGCGGAGGATCTGCGTCGGCATATGCGGACCCACACAGGGGAGCGACCTTTCAGCTGCGACATTTGCCGCAGGAGGTTCACGTTGAAACATAGCATGCTCCGCCATCGCAAGAAGCACAACAACCAGCACAACCATGGAAACATAAACTTTGAGCATCCTGAGAGCACACACAGCGACGAAGACCAAGAGAACATGCAGAGGACATCTGCAAGCGACATTATTCCGGCTTTGCTGAGCCGACGCTGCAGTTCAGACAAGGAGAAGGACGACTCGTCAGACGCCAACGAGGGAAGCGGCGATTTGATTAGCAATCTTTTAGGCATACCCGATCGGTCATTGATTGAGCAAGCGCTCACCGGGTCCGCCGATGACGCAGCCAAGTTATTGGGTGTTGGGGGCAACGAATAA
- Protein Sequence
- MQGVLCLPPGQLDRSLPNKVDEMEMPSASEPRKEITVPNQSDSSGVFSATSNSTETLDEAREHSDARSECSTPEERKVYVCPICKRTLSERHEFTLHIRSHNNDADAHQDPDKGYVCRICAKVLCSASSLDRHVLVHTGERPFTCKYCGDTFTTNGNMHRHMRTHKFDNNYESDGSVDSNASSGIATTPTRSANKSVEFNNNKLDYNSNKRKHEGADDSALVEDEDKDSSGPEDEVVHRRKKPLLEWYKCPICNRSDFSSRKSLEVHVEDNHPDYPAKCHQCEQVFPNQKRLNYHKLTVHADDAPKKKIVDGFKHLDYVDFSSDKFPTIARHECEMVFHRAPQAGPKYICDKCTRAFPCDKSLESHSKECGAPSEADRVSDLLRTRKQLLDIQRVAENIKREEFFHHLDLEDTSPKKHQKDASPVRPLVPPILKMDCSKDLADIQSIISMTNGSLQFQQFHNSGKQTSISSMDSSQTLNEPEKTEEEETQDQFAQEFRKMKLRGEFPCRLCTAIFPNLRALKGHNRTHLNSPINGSFRCNMCPHVAVDKAGVIRHMRNHNGDRPYECSICNYAFTTKANCERHLRNRHQKTTRDQVKLAIIYHPSEDPTNDEITRSLDTSKKLNTSLDSNTASNDSCARSSTPKGIPPAFPDLFPLTSKMHNVNDLLLAAATEREPVRDDWREATQQFATSTPLKTTATPSIRVKDVNALKEIPEASSFSDGEDSVPMDLSKKTPRPSEGGSESDSNAINAKPEVGHFPMAEILSQQLLKSSPVADPAVSAFFATQLAFYRNSMPNMFPGFPFNPMLMPPLLPEAAMTPEMKERLQQLNGANALKNMIFPGAVPGYPSALFSDIKAAAVAASEGKTPEEMKPLSLNVDVNFPDGASNTFNNMHMKGSAGSSPVLSQSKAELQSPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCAARFTLRSNMERHIKQQHPQYWSQRQRSASGLSTPGRKPLAQSSPSLKNPISGCELSIPMYEASKVQQDTNKSEVTEKLRFAILTQHLRAATSNANESQQMQQALVNCKKEEPSVDEDDALVIAEEDDENDQDAEEQAQEQEKEKQREQPIRTRILEEKLKELRNKQLSKDNTIAKKNEDADLVSVSRLLNNASQPLNDFREYFRPEQEEPEAASEEDEEGLVASGSTSDGNSGTDENRSENDAAANPPVKKKSAYSLAPNRVDCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTISNDQASNNYMLRNVPERPYKCSSCPSSTFSTFSNLTKHRTSKHGPQDDRQGGYEAGSSEDEKNNSDSIVTNQKSSDWEAPVKMLAGMIPSESTASPANSDLPFKCHLCDNSFGERQECLEHIRDKHASEYDLLMSKNALDPNATTPEEGNNHDEDDGETIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNNQHNHGNINFEHPESTHSDEDQENMQRTSASDIIPALLSRRCSSDKEKDDSSDANEGSGDLISNLLGIPDRSLIEQALTGSADDAAKLLGVGGNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -