Basic Information

Insect: Aleochara bilineata
Gene Symbol: -
Assembly: GCA_003054995.1
Location: NBZA01000006.1:782569-785630[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.2 3.7e+02 1.9 0.2 8 22 259 273 256 273 0.87

2 17 1.9 2.2e+02 2.6 3.5 1 20 283 302 283 304 0.93

3 17 0.22 25 5.5 0.2 1 23 333 355 333 355 0.89

4 17 1 1.2e+02 3.4 1.9 2 20 390 408 389 412 0.87

5 17 3.2 3.8e+02 1.8 2.2 1 23 437 460 437 460 0.92

6 17 2.8e-08 3.3e-06 27.2 1.2 1 23 516 539 516 539 0.98

7 17 5.5e-05 0.0064 16.8 0.0 2 23 552 574 551 574 0.97

8 17 6.1e-06 0.0007 19.9 0.9 3 23 578 598 576 598 0.96

9 17 0.13 15 6.3 2.1 3 23 638 659 637 659 0.97

10 17 0.3 35 5.1 0.5 3 23 675 695 675 695 0.98

11 17 4.4e-06 0.00051 20.3 2.6 1 23 714 736 714 736 0.98

12 17 0.023 2.7 8.6 0.6 1 23 742 764 742 764 0.97

13 17 0.11 12 6.5 0.1 1 23 797 820 797 820 0.89

14 17 0.0087 1 9.9 1.4 2 23 827 848 826 848 0.93

15 17 0.0039 0.45 11.0 0.2 3 23 865 886 864 886 0.95

16 17 2.7e-05 0.0032 17.8 0.1 3 23 899 919 897 919 0.97

17 17 0.0017 0.19 12.2 0.1 2 23 942 964 941 964 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.2	3.7e+02	1.9	0.2	8	22	259	273	256	273	0.87
2	17	1.9	2.2e+02	2.6	3.5	1	20	283	302	283	304	0.93
3	17	0.22	25	5.5	0.2	1	23	333	355	333	355	0.89
4	17	1	1.2e+02	3.4	1.9	2	20	390	408	389	412	0.87
5	17	3.2	3.8e+02	1.8	2.2	1	23	437	460	437	460	0.92
6	17	2.8e-08	3.3e-06	27.2	1.2	1	23	516	539	516	539	0.98
7	17	5.5e-05	0.0064	16.8	0.0	2	23	552	574	551	574	0.97
8	17	6.1e-06	0.0007	19.9	0.9	3	23	578	598	576	598	0.96
9	17	0.13	15	6.3	2.1	3	23	638	659	637	659	0.97
10	17	0.3	35	5.1	0.5	3	23	675	695	675	695	0.98
11	17	4.4e-06	0.00051	20.3	2.6	1	23	714	736	714	736	0.98
12	17	0.023	2.7	8.6	0.6	1	23	742	764	742	764	0.97
13	17	0.11	12	6.5	0.1	1	23	797	820	797	820	0.89
14	17	0.0087	1	9.9	1.4	2	23	827	848	826	848	0.93
15	17	0.0039	0.45	11.0	0.2	3	23	865	886	864	886	0.95
16	17	2.7e-05	0.0032	17.8	0.1	3	23	899	919	897	919	0.97
17	17	0.0017	0.19	12.2	0.1	2	23	942	964	941	964	0.93

Sequence Information

Coding Sequence: ATGACCGGTTCAAGCATCACGAATTTCCGTACATGTTGCAGGCTCTGCTTGGCAGAAGCAGCGTTGACTAACATCTTTGCACAAGACAATGAAGCGGCCACCTTTATTGAAACACTTCATGAGATGATGAATATTAAGATTAAACCTGACGACAAAGTATCAACAAAAGTATGCGATGAATGCattttggaaataaataaattccaaatcTTCAAGAAGAATTGTTTGGCAAACCAAACACAGTTACATAAATGGCTAAGTGAATATGAGGCTTCTCTGCTAAATGAGAGTATATGCATCAAGGAAGAGCctgcagatgaagatgatgtaGTACAGATTTCTGACGATGAGAGTGATGTTGTTATAAAAACTGAACCTTCAGAACTACCATTAAGTATTGCAGTTGACAACGAGGAAGATGATATGCCTCCAATCTTGTCACCCAATTTACCAACAGCGGAACTTCTAGCCCATTTCAACTCGCTAGGGGGTGTTGTAGAGACACATGAAGTATTAGAAACTGAATGCAATGGCATAGAAACAAGTTCAGATGACAATGATGCCAGCTCAGAACAAAATCAAAGGCACTGCAATGGAAAAGAACCAGAAAACAGCAATCAACAGGATAAATTGGAATTTGCTGCAGGATTACAGCTTCAGTCCAGAATGGACACAGTAAATATTGAACCAATGACTAAAACAGAGTTAGAATATGCGAAGagatttgcattattttatacATGCATACGTGACAAAAAGTGTTGCTGCCATAATCAATCGTATGCTACGGAAAAATCTCTTATGAGACACCTTAAGATGCAGAATGAAAATTTACTGTTTGCTCCTTTTACATGTCGACGCTGTTTTACTTCCTGTTACAATGCTGCAAACTTTGGTAAACATCGATACAGTTGCacattgaatgaatttcaAGACATATATCAAGTTGCCAATAAGTTTGAACGCGGTATCAATAAACACCGATCGTACCAAATGTTTGCATGTAAAATTTGTGAACAAGGATTTCGGATATTTGAACTCTACAGTCAACATGTCGATGAGCACAATTCCGAATCGGCAGAAAAAAGAGTTTGTATATGTAAACGAAAATTTGATAATGGCAACGTTTACAAGCAGCATCTATTCAGCAGCTGCGTAATGAAAATAATGTGTGATATTTGCGTGGAGGAGTTTGATACGGTTCATGAATTTAAGCAGCACTGTTTAAAAAATCATGACAAGGATGATAGCGTTCTGTGCCAAGTTactgaaacttttaaactggATGACATTCCTTTTGAACCACAATATACATGCTTAGAATGTAATATGAAATGTTTGAAGgagcaatttttaattagccatttgaaaattaatcataGTTACGACCAGGAAAACGCAAATCGCGTTGCTTCTGACTGTTATGTTGGAAGCACAGAAGATACCGAAGATTCTTTGCTGCCAGTGACATCAAAATCTATGATCAACACTGGCTCTATCCCTGAATCAGTAGTGGCCGCGCCTAAGCGAAAATCTTTAAGTAGTTTTGAGTGCgaaatttgttataaagtgTTTGGTACGAAAAGCAATTTGCGCAAGCATCAGAGGACTATACACTTCAATCGTCCAAGTGCGAAGCAGCATAGTCATATTCGATGTGGCGACTGCAATGAAACGTTCTCTGACGTTGCTTTACTCATGGTTCATCTTAATACTGAGCATAAACTTGCATGTGGCGAATGTGGACGTTCATTTAACACGCACGATGAATTAGAGAAGCATCGAAGCAgtcatttaaaactttccatAAAATTAGATCCACGAACTAAGAGTTATAAAAGCAGGCCTAGCGATGAAGATATTCCTAACTTAGTCATTGATGAATTTGATCAGAAAGCTTTACGTGTTCTCTGTAAATACTGCGATCGTTTGTTTGCGACGGAGAGAGGGTGCAAAATTCATCTGAGAAAAGTacatttaagtaataataCATCCGACAATGGACTTAAATTCCCAAAATGGTGTAGCACTTGCAAAAAAAGTATCGCAAGTTTAGCTGCTTGGAACCTACATAAACAAAAGCACAATAATAATGGATCTAGTAGTGAAACTCCCTCGGTAGCTGACGATACCGACTACTTTACTTGTAACAAGTGCTTCAAAGTGTTTCAAACTACAGGACAACTAAAAAAACATATGGCGACCCATAGCAATAAAAGGAAATACAATTGCTCGATTTGTAAATTCTCTTGCAATGCAAATCCGGAGTGGGAAAAGCATATTGCGTCGCACGAAAAAGGGAATAAAAAAAGTGTGTCGCCAAGAAACATAAATCATCCACCAAAGGTGAATTTATCGAATATTAATAGTGAAGGTTTGGAGAATCAATATATTTGCATTACTTGTGGAGAGTTATTTGAAAAACAAGCTGCCATGCAAAGGCATATTACTCAAGTGCATGGTAAAACAACGTCACTTCGATGTATTATTTGCAATATGTTCTTCACAAGCACAGAGCAATATAAGAAGCATGAGCAAACTCACAGAACGGATGTTAAAGGTCCGCCGCCGAAAAGGCAAGCTCGGGAGTTGTGCAAAATATGCCACagtgtatttacagatgaacCTGCTTTGAGATGGCATTGGGAGTCTGAACACACGGATCAACCTTATATGCCCAAAGGATGTGTAGATTGCCCTTATTGCAATGTGGCGTTTGATACATCAAAATCATTAGCATTGCATCTGAGAATGCACAAACGGAATGGGGATAAATGGAAGAAAATTGAGAAATCACCCGAGACATCAACTTCgaacaaaattaaatgtgGAATTTGTGGCAGTACTTTTAATTTGCGAGCAGAGCTACGAAGTCATTTAATTGAGAAGCACCCATTTCAAAGGAGTTAA
Protein Sequence: MTGSSITNFRTCCRLCLAEAALTNIFAQDNEAATFIETLHEMMNIKIKPDDKVSTKVCDECILEINKFQIFKKNCLANQTQLHKWLSEYEASLLNESICIKEEPADEDDVVQISDDESDVVIKTEPSELPLSIAVDNEEDDMPPILSPNLPTAELLAHFNSLGGVVETHEVLETECNGIETSSDDNDASSEQNQRHCNGKEPENSNQQDKLEFAAGLQLQSRMDTVNIEPMTKTELEYAKRFALFYTCIRDKKCCCHNQSYATEKSLMRHLKMQNENLLFAPFTCRRCFTSCYNAANFGKHRYSCTLNEFQDIYQVANKFERGINKHRSYQMFACKICEQGFRIFELYSQHVDEHNSESAEKRVCICKRKFDNGNVYKQHLFSSCVMKIMCDICVEEFDTVHEFKQHCLKNHDKDDSVLCQVTETFKLDDIPFEPQYTCLECNMKCLKEQFLISHLKINHSYDQENANRVASDCYVGSTEDTEDSLLPVTSKSMINTGSIPESVVAAPKRKSLSSFECEICYKVFGTKSNLRKHQRTIHFNRPSAKQHSHIRCGDCNETFSDVALLMVHLNTEHKLACGECGRSFNTHDELEKHRSSHLKLSIKLDPRTKSYKSRPSDEDIPNLVIDEFDQKALRVLCKYCDRLFATERGCKIHLRKVHLSNNTSDNGLKFPKWCSTCKKSIASLAAWNLHKQKHNNNGSSSETPSVADDTDYFTCNKCFKVFQTTGQLKKHMATHSNKRKYNCSICKFSCNANPEWEKHIASHEKGNKKSVSPRNINHPPKVNLSNINSEGLENQYICITCGELFEKQAAMQRHITQVHGKTTSLRCIICNMFFTSTEQYKKHEQTHRTDVKGPPPKRQARELCKICHSVFTDEPALRWHWESEHTDQPYMPKGCVDCPYCNVAFDTSKSLALHLRMHKRNGDKWKKIEKSPETSTSNKIKCGICGSTFNLRAELRSHLIEKHPFQRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -