Abil006198.1
Basic Information
- Insect
- Aleochara bilineata
- Gene Symbol
- topi
- Assembly
- GCA_003054995.1
- Location
- NBZA01014127.1:198-2481[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0003 0.035 14.5 2.4 2 21 125 144 124 145 0.94 2 14 6e-05 0.007 16.7 2.9 1 19 170 188 170 192 0.91 3 14 0.018 2 9.0 3.9 2 23 199 220 199 220 0.95 4 14 0.58 68 4.2 0.0 2 21 239 258 238 259 0.89 5 14 0.00011 0.013 15.9 0.6 2 23 319 340 318 340 0.97 6 14 0.35 41 4.9 0.1 1 19 346 364 346 367 0.80 7 14 0.57 66 4.2 6.1 3 22 384 403 382 406 0.86 8 14 0.22 25 5.5 0.1 2 23 546 568 545 568 0.95 9 14 0.00068 0.079 13.4 0.6 1 23 572 594 572 594 0.98 10 14 6e-06 0.00069 19.9 5.4 1 23 600 622 600 622 0.98 11 14 0.012 1.4 9.5 0.2 1 23 628 653 628 653 0.96 12 14 0.064 7.4 7.2 3.5 1 23 659 681 659 681 0.89 13 14 9.1e-07 0.00011 22.4 0.5 1 23 687 709 687 709 0.98 14 14 8.7e-06 0.001 19.4 1.7 1 23 715 738 715 738 0.98
Sequence Information
- Coding Sequence
- ATGATTCACAACGACCTGGTTGTGAACATAAAAGTACACAAGTTGTTTCCGGACACCTCGATTCAGTCGGTGAAATTGAAGATAGACTACCACACGCAGCAGGTGCTGGAGCGCATACCTGTCTTATTGGACCAAGAAACCGCTCCCGGGAAGATATTCAGACCGCAGAAAGATAACCAGTTTAACTTCCCACCTGTGGACTGGGACTCGCACGACTCTTGTATACGTGTGGTTCGCATTGGCGAGGTTAACGAACCCAATCCGCTAAACTGTTTGCTACCAGTATCCCACCAGTTGAAATGTGTCCCCCTGCAACAGACCTACATCCCCCCGATTTCAACCACCAAGGTACCCAATATCCCATTGATGATCCGCTGCCAAAACTGCGACACCAACTTTCCCACAAAATACCAATTCCAGCGGCATCAGTGCGAGTTCAACGCCGACAAAGTGGTGCTCAAGCCGGACGTAGACCCGAAGTTGGCCGAGAAAGGTACTCGCATCAAGTACAGCTGCCCTACGTGTAACAAACAGTTTGTGAGCAAGTCAAACCTGGATCGACACTGCGCAAGCCACGAGGAGAGCAACGCAAACGTTTGCGAGCATTGTCAAAAGCACTTTGTCAGCGAGAATCGGCTGCGCATTCATAAAGAAAACCATTGTAAAAAAGCTGGCGACCTAAACAAGTTCTACCGGAGCGATGTGGTCGTATGGCGGTGCGCGAAATGCTTTCAAGTGTTTGCATCAGAAGAGTATGCCATGGGTCATATGGCTACGTGCACTGAAAGTGCCGACGTACCTGAGGCGTTACGTGATTTAAACGAAGACATCACCGAGGTGTTGATACTCTCTGGCGATGACGCTGTGCCATTCGCTGAAATGGAGCAACTGGAGAAGTCGAAAATCCTTGAGAACAATAAGTTCGTAGCGAAGGTGCGCACTGAGCAGTTGCTGCAGTGTGAGTtctgcaaccaaacatacatcAACTCCAAGTCACTCTTGTGGCACCAGGATACGCACACCACTAACCCCAATTATAACTGCGTCATTTGCAAGGAGACTTTTGAGTCGTACACTGTCGCTGCCAAACATTGGTTGACCAAGTGTCCTAATGAGGCAATGCTTTTCTATCTGCCCAAAATGATGTACTGTAAGTGCTGTGATCGCACCTTCAAGTCGCACGACCTGCTCTACACCCACAAGATCAAGAAAAAGCATTACGTTCCAAAGAAACATCATTCTTTCGATTCGCAACTTGAAAATGGCCCCAAAAGTGACTCACAAGTAGAACCTAAACCTGAACCTGAATCTGACGGTGAAAAGGCCATCAAGGAAGAGATCAATGACGATGAACCTTCTAAGGAGAAAGAGAAAATGATTAAGATCATCGAAGGAGCATTGTCTTCCATCAAGCGCAAGTATAATGATGGTTCGTTGTGTGATGAACAACCTCAACCAATTGATCCTATCTTTCAAGATGTAGATGCCGCTGATACAAGCGGTGATAATCAGCCGTCAAAGGACACGGAGGATGAGCAGCAATCGGAAAAGAAACGTCGAGGCCGCAAGCGTAAGAACCACCAGTTGCATAAACCTCGAAAGAACAGCTTGGACTTAGCGCCTGGGTACAAACTGCAATGCGAGAGGTGCATTGAAGTGTTCAATAACGTGATGGACCTGGAGGACCATCGAAGCAAAGAGCACCCGACGAATTACAAGTGCGAGGAGTGCGATCAAGTGTTGCATAGTTCCAAGGCGCTGACGATTCACAGTCGGGCGCATCAGAGTCTTAAGCCGTATGTTTGCGAGATTTGCAAGAGGTGTTACTCGCAGACGTCGCATCTCTGGCAGCACATGCGCTTCCATCAAGGGATCAAGCCCTTTGCGTGTCCGCACGAAGGATGCGAAGCCAGGTACACTATCCGTCCGGATCTCAAGGATCATATTAGGAAGGTGCACACCCGAGAGCGACCCTTCAAATGCAATGTTTGTAATAAGTGTTTCCTCACTGGGAGTGTTTTCTATCAGCATCGACTGATCCATACGAATGATCGTAGATATGTTTGTGATATTTGTTCCAAGAGGTTCTTCCGCGCAGACGCGCTCAACAATCATCGGCGGATTCACACCGACGAGCGGCCATATCCCTGTGGGGTGTGTGGACGTCACTTCCGGCAGAAGGGCGACAGGAACAAACATGTTCGTACGCAGCATCCTACTTACTAG
- Protein Sequence
- MIHNDLVVNIKVHKLFPDTSIQSVKLKIDYHTQQVLERIPVLLDQETAPGKIFRPQKDNQFNFPPVDWDSHDSCIRVVRIGEVNEPNPLNCLLPVSHQLKCVPLQQTYIPPISTTKVPNIPLMIRCQNCDTNFPTKYQFQRHQCEFNADKVVLKPDVDPKLAEKGTRIKYSCPTCNKQFVSKSNLDRHCASHEESNANVCEHCQKHFVSENRLRIHKENHCKKAGDLNKFYRSDVVVWRCAKCFQVFASEEYAMGHMATCTESADVPEALRDLNEDITEVLILSGDDAVPFAEMEQLEKSKILENNKFVAKVRTEQLLQCEFCNQTYINSKSLLWHQDTHTTNPNYNCVICKETFESYTVAAKHWLTKCPNEAMLFYLPKMMYCKCCDRTFKSHDLLYTHKIKKKHYVPKKHHSFDSQLENGPKSDSQVEPKPEPESDGEKAIKEEINDDEPSKEKEKMIKIIEGALSSIKRKYNDGSLCDEQPQPIDPIFQDVDAADTSGDNQPSKDTEDEQQSEKKRRGRKRKNHQLHKPRKNSLDLAPGYKLQCERCIEVFNNVMDLEDHRSKEHPTNYKCEECDQVLHSSKALTIHSRAHQSLKPYVCEICKRCYSQTSHLWQHMRFHQGIKPFACPHEGCEARYTIRPDLKDHIRKVHTRERPFKCNVCNKCFLTGSVFYQHRLIHTNDRRYVCDICSKRFFRADALNNHRRIHTDERPYPCGVCGRHFRQKGDRNKHVRTQHPTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -