Abil014159.1
Basic Information
- Insect
- Aleochara bilineata
- Gene Symbol
- -
- Assembly
- GCA_003054995.1
- Location
- NBZA01000223.1:92301-94457[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00047 0.054 13.9 4.8 1 23 101 123 101 123 0.97 2 11 0.0012 0.14 12.7 13.6 1 23 129 151 129 151 0.96 3 11 1.2e-05 0.0014 18.9 5.5 1 23 157 179 157 179 0.99 4 11 2.9e-05 0.0033 17.7 3.0 1 23 185 207 185 207 0.97 5 11 2e-05 0.0023 18.2 2.3 1 23 213 235 213 235 0.95 6 11 4.5e-06 0.00052 20.3 1.6 1 23 241 263 241 263 0.97 7 11 0.00017 0.019 15.3 4.6 1 23 268 290 268 290 0.97 8 11 2.8e-05 0.0032 17.8 2.4 1 23 296 318 296 319 0.96 9 11 0.00065 0.076 13.5 0.0 2 23 329 350 328 350 0.96 10 11 0.00095 0.11 12.9 4.6 3 23 418 438 416 438 0.96 11 11 6.4e-05 0.0074 16.6 4.2 1 23 448 470 448 470 0.96
Sequence Information
- Coding Sequence
- ATGTGTGCTACCACAAATTTTGCATACAACTGGCAGTTGGAGCCGCAGAACACGGCGGAGGATTTACACAACTATTCGATTCAAAGCGTCCTCGACCCGCAAAAGGTAAAAATTCGTAAACCAATGTTCTTCATAAAACCAGAGACGGGGCCTGGGGAGAAATTGGAGAAGCATCTCATTTCGCCGTATGCTACTGTCCAGCTGACGCCGGAGGAGTACAATCAAATCATCTCGAAGCGACATGAAGTGCCCGTGAAGCCCGAAGGTCCGCCGGAGGAGCCAAGTCCGAAAATACGTCCATTCGCATGCAATGAGTGCGGCAAAACGTTCTTGCTGAAGCATCATCTGACCACTCACGAGAAGACTCACTCTGGCATCAAGCCGCACTCTTGTCATCACTGCGGGAAGGCCTTCACCCACAAGCACTGTCTGAACACTCACTTGCTGCTCCACTCCAGCCAGCGGCCCTACCAATGCGTCGAGTGCAAGAAGAGCTTCACCCTCAAGCACCACCTCATCACACACACGAGGGTGCACAACCGTGAGCGCCCCTTCGTCTGCAAGGACTGCGGCCGGACCTTTCCTCTGAAGCGGCATTTGGTTACCCACACTAAATTCCACGCTGGCGAGCGGCCTCATATATGCACGGAATGCGGGGAGAGCTTCGCGCAGAAGGACCACTTGGTAATGCATTCGCGATTCCACGGAGCGATCAACTCGTTTATCTGCCATGATTGCGGCGCGTCGTTCACGCGCAAGTTTGAATTGGTAAATCACAATCGCTTGCACGGTAAGAACCCGCATTCCTGCCCCATTTGTCACAAGGAATTTCTGCAGAAGCGCACACTCATCACGCATATGCGGTACCACAGCGGCGAGTACAACTTCTCCTGTACGACGTGCGGCGAGACCTTTCAATCGAAGCCTGAGCTGACGATGCACACCAAGATGCACCACCACCCCGAAGCAGAGATAAAGCCTCTGTCGTGCTCCGAGTGCGCATTGACATTCAACTCTCCGGAAGCGCTCGCGCTACATATCAAGCTGCATAGTGGCGATTCCCTGCTCGTCAATGATCTGTGCACGCTCACCGCCAGTCTGCATCATCCATCCTTCCCGATGGGCCATCCCGGCGCCAACTACTCGCAATACAAGCACGTGATGAACTATTCCGTTGGTACCAATATGACCGCCACTCCAAACACCAGCAATCAGAAACAGCAGAATGCGCAGAAGATTAAACCGCATCTGTGTAAGGTTTGCTCGAAAGCATTCAGTGCTAAGCATGGCCTCCAACAGCACACGAAGCGCCATCCCGAGGGCACATGTGCGCTTAAATCTCATATCTGCGACCTGTGCAATAAGGGCTTCTACCAAAAGAATCACTTAATATTGCATCAACGTCAGCACTTTGATCCTAAGCGTAATGGGCAagtgcagcagcaacaacaacaagcggcacagcagcagcaacaacagcaagcggcgcagcagcaacaacagcaaacggcgcagcagcaacaacagcaagtggtacaacaacaacaagtggtacagcaacagcaagtggtgcagcagcagcagcaacaacaagtgGCACAGCAAGCGGTACAgctgcagcaacagcaagcgGCACAactgcagcaacaacagcaagcgacacaacaacagcaagcggcacaacaacagcagcagcaacaacaacaagcggcacagcaacagcagcatcCACAGTCGCAACCTCAACAGCAGCAACCACAACCTACTGTCACGGTGCCAGTGGTCGTGCCTCAGCAGCaaaaacttgaacttgatGATAAGAACGATATTGAACTCATAAAACACGAAGTAGTCATACAGCCCGATTGCACTCTTTCAGAGTTCTCGTAA
- Protein Sequence
- MCATTNFAYNWQLEPQNTAEDLHNYSIQSVLDPQKVKIRKPMFFIKPETGPGEKLEKHLISPYATVQLTPEEYNQIISKRHEVPVKPEGPPEEPSPKIRPFACNECGKTFLLKHHLTTHEKTHSGIKPHSCHHCGKAFTHKHCLNTHLLLHSSQRPYQCVECKKSFTLKHHLITHTRVHNRERPFVCKDCGRTFPLKRHLVTHTKFHAGERPHICTECGESFAQKDHLVMHSRFHGAINSFICHDCGASFTRKFELVNHNRLHGKNPHSCPICHKEFLQKRTLITHMRYHSGEYNFSCTTCGETFQSKPELTMHTKMHHHPEAEIKPLSCSECALTFNSPEALALHIKLHSGDSLLVNDLCTLTASLHHPSFPMGHPGANYSQYKHVMNYSVGTNMTATPNTSNQKQQNAQKIKPHLCKVCSKAFSAKHGLQQHTKRHPEGTCALKSHICDLCNKGFYQKNHLILHQRQHFDPKRNGQVQQQQQQAAQQQQQQQAAQQQQQQTAQQQQQQVVQQQQVVQQQQVVQQQQQQQVAQQAVQLQQQQAAQLQQQQQATQQQQAAQQQQQQQQQAAQQQQHPQSQPQQQQPQPTVTVPVVVPQQQKLELDDKNDIELIKHEVVIQPDCTLSEFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00631648;
- 90% Identity
- -
- 80% Identity
- -