Basic Information

Insect: Aleochara bilineata
Gene Symbol: -
Assembly: GCA_003054995.1
Location: NBZA01001932.1:57350-59013[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.8e-05 0.0044 17.3 0.7 1 23 11 34 11 34 0.98

2 15 2.7 3.2e+02 2.1 1.2 1 9 42 50 42 52 0.87

3 15 2.1e-05 0.0025 18.1 0.8 1 23 71 94 71 94 0.97

4 15 0.0029 0.34 11.4 0.2 3 23 100 120 99 120 0.96

5 15 0.014 1.7 9.2 2.8 2 23 144 165 143 165 0.97

6 15 1.9e-05 0.0023 18.3 1.5 1 23 171 193 171 193 0.98

7 15 0.00015 0.018 15.4 3.2 1 23 199 222 199 222 0.96

8 15 0.00065 0.076 13.5 6.5 1 23 244 267 244 267 0.96

9 15 0.00079 0.092 13.2 1.9 1 23 273 296 273 296 0.97

10 15 3.9 4.6e+02 1.6 1.6 1 8 304 311 304 319 0.88

11 15 4.1e-05 0.0048 17.2 0.1 1 23 333 356 333 356 0.96

12 15 0.0025 0.29 11.6 2.4 3 23 362 382 361 382 0.97

13 15 0.0018 0.21 12.1 0.6 2 23 407 428 406 428 0.97

14 15 1.3e-06 0.00015 22.0 0.2 1 23 434 456 434 456 0.98

15 15 0.00078 0.091 13.2 3.4 1 23 462 485 462 485 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.8e-05	0.0044	17.3	0.7	1	23	11	34	11	34	0.98
2	15	2.7	3.2e+02	2.1	1.2	1	9	42	50	42	52	0.87
3	15	2.1e-05	0.0025	18.1	0.8	1	23	71	94	71	94	0.97
4	15	0.0029	0.34	11.4	0.2	3	23	100	120	99	120	0.96
5	15	0.014	1.7	9.2	2.8	2	23	144	165	143	165	0.97
6	15	1.9e-05	0.0023	18.3	1.5	1	23	171	193	171	193	0.98
7	15	0.00015	0.018	15.4	3.2	1	23	199	222	199	222	0.96
8	15	0.00065	0.076	13.5	6.5	1	23	244	267	244	267	0.96
9	15	0.00079	0.092	13.2	1.9	1	23	273	296	273	296	0.97
10	15	3.9	4.6e+02	1.6	1.6	1	8	304	311	304	319	0.88
11	15	4.1e-05	0.0048	17.2	0.1	1	23	333	356	333	356	0.96
12	15	0.0025	0.29	11.6	2.4	3	23	362	382	361	382	0.97
13	15	0.0018	0.21	12.1	0.6	2	23	407	428	406	428	0.97
14	15	1.3e-06	0.00015	22.0	0.2	1	23	434	456	434	456	0.98
15	15	0.00078	0.091	13.2	3.4	1	23	462	485	462	485	0.96

Sequence Information

Coding Sequence: ATGTACCGTATACATGTTTCCGAGAAGCCTTATAAGTGCCCTTTTTGCGACCGCAGATTTCCAATGAAAAGTTTTCAGCAGGCACACATAAAAATAGTTCATGAACAGAAATACCGTAAAGAATTCAAGTGCGACAAGTGTGACTACAAATCAATTTGCTTGAATATAGCTACTGCCCGGAAACATTCTTGTCCTGGAAGCGATAAGAAATACGTTTGTGAAATCTGtgagaaaatattcaatggGGAACATCAATTAAAAGAGCATATTAAGTATCAACACAACGGTGGTGGAATATGTGATGGATGTGGACTTGACTGTCCTAATTTTGCAACTCTTCAAAGACATTATGCGATACataataagaatttattaGAAAAGGAGAAACTAAAGAACAAAGCAAGAAAGGAGAGGGAGAAGGACAGGAACCAGTGCAACTTGTGCCAAAAATGGTTGTGTTCCAAAGAATCTCTAAGAGATCATATGAATTACCACAAAGGACTTAAGAACTATATCTGCAACACATGTGGCAAGGCTTTTGGAAAATGCACCACTTTGAAAGTGCACGAACGTGTTCACACAGGGGAGAAGCCGTTTGCATGTAAATACTGTGGTCAAAGATACACACAACGCCACACTGTGAAGAGTCACATCGAGAAACAGCATCCAGAATGGCAACTCAGCGAAGAAAGCATTGGAAAATTAATagttaaaatatGGAGGAAGGGGTTTCCCTGCTGTGTTTGTACAAAAACCTACAAGAAAAAGCATCTACTACGATCTCACATGTACCGTGTACACGTTTTTGAGAAGCCTTATAAGTGCTCTTTTTGCGACCGAAGATTTTCAATGAAGGAGTTCCAACGAGTACACATAGAAAAAGTTCATGAAAAAGAATCCCGCATAGAATTTAAGTGCGATAAATGTGACTACAAAGCAAATTGCAATAGTTTAACTGCTGCCCGGCGACATTCTTGTCCTGGAAGCGATAAGAAGTACGTTTGTGATGTCTGTGGGAAAATATTCAACGGAGAAcctcaattaaaaatgcataccAAGAATATACACACCGGTGGTGGGATATGTGACGGATGTGGACATGACTGTCCTAATTATTCCACTCTTCGAATGCATTACATGAAACACAATAAGAAGGGTAATTTAGAAAGGAAGACACCTAAGAAAAGAGCAAGAGAGGGGAAAGACAAGGAAAAGGTTCAGTGCAAATTGTGCCAAAAATTGTTGAGCGGTAGAGAGTCACTAAAAGATCATATGAATTACCACAATGGAATTAAGAACTATATCTGCAACATTTGTGGAAAGAGTTTTGGAAAACTCAATACTTTGATAGTGCATCGACGTGTCCACACAGGGGAACAGCCGTTCGCATGTAAATTCTGTGGACAAAGATACACACAACGCCACACTGTGAAGAGTCACATCGAGAAACAGCATCCAGAATGGCAACTCAGCGATGAAAACATTCGAAACttgataattaaaatgtgtTAA
Protein Sequence: MYRIHVSEKPYKCPFCDRRFPMKSFQQAHIKIVHEQKYRKEFKCDKCDYKSICLNIATARKHSCPGSDKKYVCEICEKIFNGEHQLKEHIKYQHNGGGICDGCGLDCPNFATLQRHYAIHNKNLLEKEKLKNKARKEREKDRNQCNLCQKWLCSKESLRDHMNYHKGLKNYICNTCGKAFGKCTTLKVHERVHTGEKPFACKYCGQRYTQRHTVKSHIEKQHPEWQLSEESIGKLIVKIWRKGFPCCVCTKTYKKKHLLRSHMYRVHVFEKPYKCSFCDRRFSMKEFQRVHIEKVHEKESRIEFKCDKCDYKANCNSLTAARRHSCPGSDKKYVCDVCGKIFNGEPQLKMHTKNIHTGGGICDGCGHDCPNYSTLRMHYMKHNKKGNLERKTPKKRAREGKDKEKVQCKLCQKLLSGRESLKDHMNYHNGIKNYICNICGKSFGKLNTLIVHRRVHTGEQPFACKFCGQRYTQRHTVKSHIEKQHPEWQLSDENIRNLIIKMC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -