Basic Information

Insect: Aleochara bilineata
Gene Symbol: -
Assembly: GCA_003054995.1
Location: NBZA01005167.1:56485-58711[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.013 1.5 9.4 0.3 1 22 171 192 171 195 0.92

2 11 0.0002 0.023 15.1 2.9 2 23 202 222 201 222 0.97

3 11 4.3e-05 0.005 17.2 3.5 1 23 228 250 228 250 0.98

4 11 6.8e-07 7.9e-05 22.8 0.4 1 23 256 278 256 278 0.97

5 11 0.041 4.7 7.8 0.4 3 23 296 317 294 317 0.94

6 11 0.032 3.7 8.2 0.0 3 23 338 361 337 361 0.91

7 11 1.8e-06 0.00021 21.5 3.9 1 20 364 383 364 386 0.93

8 11 4e-06 0.00047 20.4 1.0 1 23 392 414 392 414 0.98

9 11 3.4e-07 3.9e-05 23.8 5.7 1 23 420 442 420 442 0.99

10 11 3.8e-07 4.5e-05 23.6 2.6 1 23 448 470 448 470 0.99

11 11 3.3e-05 0.0039 17.5 3.0 1 23 476 498 476 498 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.013	1.5	9.4	0.3	1	22	171	192	171	195	0.92
2	11	0.0002	0.023	15.1	2.9	2	23	202	222	201	222	0.97
3	11	4.3e-05	0.005	17.2	3.5	1	23	228	250	228	250	0.98
4	11	6.8e-07	7.9e-05	22.8	0.4	1	23	256	278	256	278	0.97
5	11	0.041	4.7	7.8	0.4	3	23	296	317	294	317	0.94
6	11	0.032	3.7	8.2	0.0	3	23	338	361	337	361	0.91
7	11	1.8e-06	0.00021	21.5	3.9	1	20	364	383	364	386	0.93
8	11	4e-06	0.00047	20.4	1.0	1	23	392	414	392	414	0.98
9	11	3.4e-07	3.9e-05	23.8	5.7	1	23	420	442	420	442	0.99
10	11	3.8e-07	4.5e-05	23.6	2.6	1	23	448	470	448	470	0.99
11	11	3.3e-05	0.0039	17.5	3.0	1	23	476	498	476	498	0.98

Sequence Information

Coding Sequence: ATGAATGTAGAAGAAGTGAttcttttgaataaaattgacAAGAAAATAGATAAAACGCCAAGCGTTGGAGATTTTGACCGGATCTGCCGCGTATGTTTAGATACACTCATCACAAATGAAAGCAAACCTCTCCAAGATGAACATTTTAAACTTAGCATTAAATCGCTACTGGAGACATACACCTTCATTAAGattCCCGAAGAGACTGATCCGTTGCCACAAAATATATGTATGAGCTGCATAAAATTTATGGTAGAAATGCATACATTCAGATGCAAAAGAATGGTCAATGAAGATGTACTGAAGAAagtaataaagaaatataataagGATGTAAGAGAATCATTGGCGATGCATGATTACGCAAATTCTCAAGAAAATCCAGCTGATAACCCTGCTGTTATCAATGGACAGGTGGAGATTCCTTTACTTCCTGAGGTCGAAACTCCAGCATCTGCTCAGCCTTTAATATGGCTTTCAAGGGAGCTATGTGATGAAAAATTaggtatttttaaatgtaGAGATTGTCAGATTGAATTGCCTGATAGGCAATCTTTATTACAACACAGAAGAGAAGTCCAGCATTGGAAAAATGCAGCAACACAGTGTCCTCAGTGTGGAAAGTTTGTTAACAGATCTAGACTCATGCATCATATGAGGACGCATTCACAAGAAAAACGATTTCAATGCGAATTATGCTCTCTTAAAACAACTACTAAACAGCATTTGAAAAGGCATATGCTTATTCACACCGGAGAAAAACCATACCAATGTAATATTTGCGGCAGAGGATTTCGCCAAGCATATGCGCTGCAAACGCACAAAACTATTCACGGGGAAGTTTTTGAATCACAACGACGGATTCTGCGTTTTGATAACATAATTTGTCAAATTTGCCAACATGGTTATGAAAATACTGCTAAGTACGTTCAGCATATGAAAGAAGAACATAATATAGAACATGCCGACGGTAGAGAGGATGGAGAAGGAAATAGATTTGAAATTATGGATTGTCCAATGCAGGATTGTGATGAACAATTTATCGGTGAAGAGTCACTGAATCAACATTTAGCAGGGTTTCATAAGTCTTTCGCGTGTCACGTTTGCGGTAAATGCTTTCGGAGCAGAACTAATCTTAAAACGCACATGTGGATTCATACCGGCGagaaaatgtacaaatgcGACGTTTGCGAGAAACGGTTTGTACAATATTCAGCACTTgttatgcatatgcatattcatAGCGGAGTTAAGCGCTACACTTGCAAAGTATGTTCACGACCATTCCGTCAACCAAACCATCTTAAGCATCATATGCGGACTCACACTGGAGAAAAACCATTCAAATGCGAATATTGCGGGCGGTGTTTTGCACTAAATGGTAATCTTACTGTGCATAAACGAACACATACAGGAGAAACACCATACCATTGTCGCGTTTGCAATAAGGGCTTCATTGATTCCACCAGCTTGAAAAAGCACGAACGCAATCATTCTGATCAAGAAATGATCGCATCTTCCGAAGAAATAGTGGAGGAAATGGATCCTAAGGGAGAGATACATGAACATTTGACTGAAGAAGAATTGGCACAAATGGATCACGAAACCATACAAATCCATCAAGACATAGATGAAGAAATTCCAGAAGGTTTGGAACACGAAATACAAGAGGGAATTAAACATGATATTCAAGGTGGGCTGATTGAACATGTGGTCGAAGGAGTTGAACATGAAATTGGCGAGGTCATTGAACACGCAATAGAAGGCGTGGTGGAACATGAATTTGAAAATGCGCTAGGTCATGAGATTGAAGGTGAAATTGTTCATGAAATTACTGAAGGTTTGGAACATGAAATCGTTGAAGGGATGGAGCACGAGATTGATGGGGATTACGTACAAGAAATGGAAGGCGAATATGAGCAGGAAATTGAAGGGGAATATGAGGACGAAGTTGGCCATGAAATGATAGATGAAGTGGAAATTCAggaagaaattcaatatcaGGTGGAAGAAGTAGATGGAATTGGTGGAGTGGATGAGGAAGGACAAGCAGTCAGTTTTATAATGCACGACCTGGGAAATGGCGAGAAACAATATTATGTTACTGAATATcaacaagaataa
Protein Sequence: MNVEEVILLNKIDKKIDKTPSVGDFDRICRVCLDTLITNESKPLQDEHFKLSIKSLLETYTFIKIPEETDPLPQNICMSCIKFMVEMHTFRCKRMVNEDVLKKVIKKYNKDVRESLAMHDYANSQENPADNPAVINGQVEIPLLPEVETPASAQPLIWLSRELCDEKLGIFKCRDCQIELPDRQSLLQHRREVQHWKNAATQCPQCGKFVNRSRLMHHMRTHSQEKRFQCELCSLKTTTKQHLKRHMLIHTGEKPYQCNICGRGFRQAYALQTHKTIHGEVFESQRRILRFDNIICQICQHGYENTAKYVQHMKEEHNIEHADGREDGEGNRFEIMDCPMQDCDEQFIGEESLNQHLAGFHKSFACHVCGKCFRSRTNLKTHMWIHTGEKMYKCDVCEKRFVQYSALVMHMHIHSGVKRYTCKVCSRPFRQPNHLKHHMRTHTGEKPFKCEYCGRCFALNGNLTVHKRTHTGETPYHCRVCNKGFIDSTSLKKHERNHSDQEMIASSEEIVEEMDPKGEIHEHLTEEELAQMDHETIQIHQDIDEEIPEGLEHEIQEGIKHDIQGGLIEHVVEGVEHEIGEVIEHAIEGVVEHEFENALGHEIEGEIVHEITEGLEHEIVEGMEHEIDGDYVQEMEGEYEQEIEGEYEDEVGHEMIDEVEIQEEIQYQVEEVDGIGGVDEEGQAVSFIMHDLGNGEKQYYVTEYQQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -