Abil001599.1
Basic Information
- Insect
- Aleochara bilineata
- Gene Symbol
- -
- Assembly
- GCA_003054995.1
- Location
- NBZA01003476.1:61885-64829[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.051 6 7.5 6.2 1 23 165 188 165 188 0.98 2 18 0.0061 0.71 10.4 7.9 1 23 193 215 193 215 0.98 3 18 0.00013 0.015 15.7 0.4 1 21 221 241 221 242 0.95 4 18 0.00033 0.038 14.4 0.2 1 23 249 271 249 271 0.95 5 18 2.1 2.4e+02 2.4 8.1 1 23 347 370 347 370 0.97 6 18 0.00011 0.013 15.8 5.5 1 23 375 397 375 397 0.98 7 18 0.00048 0.056 13.9 1.3 1 20 403 422 403 424 0.93 8 18 2.1e-05 0.0024 18.2 0.9 1 23 431 453 431 453 0.95 9 18 0.0034 0.4 11.2 0.1 1 23 590 613 590 613 0.93 10 18 0.00091 0.11 13.0 2.3 2 23 620 642 619 642 0.94 11 18 0.16 19 5.9 0.2 2 20 646 664 645 666 0.93 12 18 1.1e-06 0.00012 22.2 2.2 1 23 676 698 676 698 0.98 13 18 0.001 0.12 12.8 1.2 1 23 704 726 704 726 0.95 14 18 1.2e-06 0.00014 22.0 0.3 1 23 733 755 733 755 0.96 15 18 2e-05 0.0023 18.2 2.8 1 23 761 783 761 783 0.98 16 18 1.3e-05 0.0015 18.8 5.1 3 23 791 811 789 811 0.96 17 18 1.7e-07 2e-05 24.7 0.3 1 23 817 839 817 839 0.99 18 18 0.015 1.8 9.1 0.2 1 23 844 867 844 867 0.97
Sequence Information
- Coding Sequence
- atgGTAAAAGAAGGcttattgcatttcaatgaaatttgtCGGTGTTGTAAAAATAGTTCAAgtgaattgttttttatttatgacgAAAAACACTTGGACCCTGAGTATCCTCGTATTGATGAGATGATAATGACCTGTACTTCAATAACGGCACATAGGGGCGACGGTCTACCTCAACATTTATGTCTTCCCTGCCTTGAGCGACTCAAAATTGGCTATGCAATACGTCGTGATTTAGAGCAAGCTGATAACGATTTACGAATTCAATTAAGGACACACACTGCTAGTAATACTGCCGAGGTAATGACCGGTATCTTACAAGATTTCTTTGGTAGCGACTGCCAAGAAAATGCAGAGATAACCAATGTTAATCCATGTAAAAAAGAAGTGAATAGTGAAACATTAGAAAATCAGAACGATTTATCTACTAATGATTCCAATGAAACTTTAGAAGAGAACAATGATGAAGAGGAAGACCGGTCAATTGATcaatacaaatgtaaaacatGTTGTACCATGTATAAATCGCAAAAGAGTCTTTCAAGCCATATTCAACGCTATCATTCTAATACTGCGTATGTTTGTAAAGTTTGTTCCAAAAATTGTAAGCGACTGGATCATGCCAAACGCCATCTTCATACGCATTTAAAAGTTGCACcatatatttgtaaaaaatgtaaCCATCCTTTCAAAACACCAGAACATTTAGGTATCCACATACAAATTTGTGATGGCACTCGAAAATATTTCTGTAACATCTGTGGCAAAGGATTTGTAGAAGAAATGACGTTAAAAGTACATAAGGAATTACACGAAGAAGATGGCAGTAACATTCTTGCAGCgcataaaatattagatatCACTGACataacaaattttcaaaatttttttgaaattacAAACTCTAAAGAAGAAGTTACAGAGgaaattaatgttaatcagCGTACAAAAGAAGTAAATAGTGAAACTTTGGAAAATCAAAATGATTCAAATTTAGAAGAGAACAATGATGAAGAGGAAAGCTGGTCAATtgataaatacaaatgtaaaacttGTTGTACCGTGTACAAATCGCAAAAAAGACTTTCAAGTCATATTCATCGATATCACTCTAATACTGCCCATGTTTGTAAAGTATGTTCGAAAAATTTTAAGCGGCTGGATCATGCTAAACGTCATCTTCAAACGCATTTAAAATCTGCACcttatatttgtaaaaaatgtaaCCATCCTTTTAAAACACCAGAACATTTAGGTGTTCACCTACACATTTGCGATGGCACtcgaaaatatttttgtaacaCCTGCGGCAAAAGCTTTGTAGATGAAAGGACGTTAAAAGTTCATAAGGAACTACACAAAGAAGATGGCAGTGACATTCTTACAGCgcataaaatattagatatCACTGACataacaaattttcaaaagttttttgaaacaataaactcccaagaaaaactaaaaatttcTCGTGAAGAACTTTTATCTGAAACTGAGGAAAGTGAGAGAGTAAGTTCTATATTAGTTGATGAGGTCAGTGGAGAAGCAGAAACAGATGAATCTAACTACAAAGTCACTTTGCCGGAACCGGAAGTAATTCTAGACGCACAAATTGATACTGATACAGATAGTGACTACGAAGAAACCCTAAAGAAACGAAGAAGTAGGCAGAAAAAAACTTCACTGCGGGGTAGAAAACGAGGTAGGCCGGCGAAAAAAATACCACAGAAAGATAAAACTAAAGAAGATGATGAcaatgcatgttttgtttgtcCGCTGTGTTCTGCTagttttaagaaaattgaGATGTTAGAGCAACACGGAAAAGAAGTACATGCAGATGAGTACGTTCTGAAGTGCGATAtgtgttttaaaacatttgcgAAAGTGCATGGTTTGAGAAGACATAGACAGTTGGAACATAACAAATCTTCTTGCAAAAGTTGTTCAGCATCATTCGAGACAGATGAGTTATTGCAACAACATACCCTTGAATGTGCATCGCAAAACATAGTCAACGAATTTAGCTGTGAAAAGTGCCTTAAAACATTCACAAAGGAAAGCTATCTGCAAAACCATATGCGGGTTCACTCGCAATCTCGAAGTCACGCTTGTTCATATTGTGGCAAAGCATTCTTGTCACGAGCGAGCTTGAGTGAGCATTTGAAGTTTCATACTGACCACGGAAAGAAGTTTTTATGCTCTATTTGTGGTCAAAGGTTCATTCGTAATGCCTATTTAGTTGTACATATGCGACGACATCGAGGGGAGAAaccattcaaatgcaaattttgcaATCGAGGATTTCCTAGATCAACAGATCTGAAAACACATGAACGTTACCACATGGGGGTAAAACcgcatttatgtacattttgtGGGCGAAGATTTAACCGGGCGTGCAACTTAACAGTTCACATTCGAACACACACTGGCGAAAAACCATACAAATGCACATATTGCGACGCAGCATTCGCACAATCTAATGATCTTAAAGCTCATATAAGAAGGCATACAGGCGAACGTTTTCAATGTGATTTATGTCCAGAAACATTCTTGATGGGCTACGCATTAGTCAAACATAAACGAACTATTCATGGACTTAATGTGACTACCAATATTAAACGACTAACCAACGATGGAACGATGGATGATTTACCAGAGGCGGAAGTATTAAATCTTCCAACACCAGCGATACCAAGTTTTCCAGCGCCTGTTTAA
- Protein Sequence
- MVKEGLLHFNEICRCCKNSSSELFFIYDEKHLDPEYPRIDEMIMTCTSITAHRGDGLPQHLCLPCLERLKIGYAIRRDLEQADNDLRIQLRTHTASNTAEVMTGILQDFFGSDCQENAEITNVNPCKKEVNSETLENQNDLSTNDSNETLEENNDEEEDRSIDQYKCKTCCTMYKSQKSLSSHIQRYHSNTAYVCKVCSKNCKRLDHAKRHLHTHLKVAPYICKKCNHPFKTPEHLGIHIQICDGTRKYFCNICGKGFVEEMTLKVHKELHEEDGSNILAAHKILDITDITNFQNFFEITNSKEEVTEEINVNQRTKEVNSETLENQNDSNLEENNDEEESWSIDKYKCKTCCTVYKSQKRLSSHIHRYHSNTAHVCKVCSKNFKRLDHAKRHLQTHLKSAPYICKKCNHPFKTPEHLGVHLHICDGTRKYFCNTCGKSFVDERTLKVHKELHKEDGSDILTAHKILDITDITNFQKFFETINSQEKLKISREELLSETEESERVSSILVDEVSGEAETDESNYKVTLPEPEVILDAQIDTDTDSDYEETLKKRRSRQKKTSLRGRKRGRPAKKIPQKDKTKEDDDNACFVCPLCSASFKKIEMLEQHGKEVHADEYVLKCDMCFKTFAKVHGLRRHRQLEHNKSSCKSCSASFETDELLQQHTLECASQNIVNEFSCEKCLKTFTKESYLQNHMRVHSQSRSHACSYCGKAFLSRASLSEHLKFHTDHGKKFLCSICGQRFIRNAYLVVHMRRHRGEKPFKCKFCNRGFPRSTDLKTHERYHMGVKPHLCTFCGRRFNRACNLTVHIRTHTGEKPYKCTYCDAAFAQSNDLKAHIRRHTGERFQCDLCPETFLMGYALVKHKRTIHGLNVTTNIKRLTNDGTMDDLPEAEVLNLPTPAIPSFPAPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -