Abil011546.1
Basic Information
- Insect
- Aleochara bilineata
- Gene Symbol
- -
- Assembly
- GCA_003054995.1
- Location
- NBZA01000515.1:86234-89819[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.17 19 5.9 2.6 1 23 123 146 123 146 0.94 2 17 3.8 4.4e+02 1.6 0.9 1 23 180 204 180 204 0.74 3 17 0.00014 0.016 15.6 0.9 1 23 242 264 242 264 0.99 4 17 3.8e-05 0.0044 17.3 3.2 1 23 271 294 271 294 0.96 5 17 3.1e-05 0.0036 17.6 0.9 1 23 300 322 300 322 0.98 6 17 1.2e-05 0.0014 18.9 2.3 1 23 331 353 331 353 0.97 7 17 2.2e-05 0.0025 18.1 0.2 1 23 359 381 359 381 0.98 8 17 0.062 7.2 7.2 0.5 1 23 533 555 533 555 0.96 9 17 3.7e-05 0.0044 17.4 1.9 2 23 567 588 566 588 0.96 10 17 0.0017 0.2 12.1 3.6 1 23 593 615 593 615 0.99 11 17 3e-08 3.5e-06 27.1 1.0 1 23 622 644 622 644 0.98 12 17 1.9e-05 0.0023 18.3 0.3 1 23 650 672 650 672 0.95 13 17 1.4e-05 0.0016 18.7 0.1 1 23 678 700 678 700 0.98 14 17 2.1e-09 2.5e-07 30.7 1.0 1 23 706 728 706 728 0.98 15 17 4.4e-05 0.0051 17.2 2.2 1 23 734 756 734 756 0.98 16 17 4.6e-07 5.4e-05 23.4 1.2 1 23 762 784 762 784 0.98 17 17 1.7e-06 0.0002 21.6 0.4 1 23 790 812 790 812 0.98
Sequence Information
- Coding Sequence
- ATGGAGATAACTGAACTGTGCCGAACGTGTATGGATACAGTAGGTCCGTTTAAACCTTTGTTTTCCAAAGATTTACCATTGTCAACAATGATAATGAGTTACACTAATTTACAGCTGTTACCTGATGATGGTTTATCTCATAAAATTTGCGAATGTTGCGCAAAGAAAGCAGttgaattatttgaatttaaacaacTATGCGAAACTACAAATGTGACCcttcaaacaaaacttaaacaTAATACCAAAGTGAAATTCAAAATAGAAATTGGACCTGCATTTTCCTTGCAAGATCATATAgagttaattgaaaatgatgCTTTTGCGTATGGTAATTTAAAAACAAGCAGTGAAGGAAAAATTTACCACACTTGTGATATCTGTAGTGCCAGTTTTCCTTGCCATGATGATTTGATTAATCATGAATTGAAAGAACATGTAAATTTTTCAACAAACTGTTATGATACCAACGGTCTTGAATCTCTCACTGAAAATAAACCCAAGGAACGTGTTCAACCGTCTGTAACAGAAGAACTATATAAATGTTTACTGTGCAAAGAAGATGAAACTGAAAGGAATGAATCTGATCTCAAAGAACACTTAATGTGGCATGCTAGGGAGTTACGCAAGAGAAAAAAAGGACTTATTTGCGAATTCTGTTCTAGTAAATCACGGAAACTCTGCGAATTAGTTATACATTATTTTCGACACATCAAAAACCCTTATCGATGCGCGGAGTGtaagaaaaaattcaaaatattggAGGATTATGAAAACCATCTAAAGGTACACTTAGGTGTAAAGAAGGCTTATAAATGTTCCCTTTGCCCCAAAGCATTCAGCAGCCAATATAACCTTAAGTGTCATACACGCCTGGTGCACAATGGTGAtgaaaaattttcatgtgCAACCTGTGGTAAAGGATTTATACAGTTTCATGCTTTGAAACTTCATATAATGAGTCATGTAGGAAATGAAGCATCTAAATTGCATGTCTGCAGTCTTTGTAACAAGAGATTTGGAACAAATACTCAATTAAACAACCATTTAAGGGGACATTCAGACGATCGCCCATTTGTATGTTCAACTTGcggaaaaacattcaaattggTTGCATCATTAGACAGGCATATCCTTATTCATACCGGTGAAAAGCGGTATGAATGTGAGTTATTGCCGGATGATGGATTACCTGACAAAATATGTGAACCCTGTGCAATGCGAACAGTTgaaatgtttcaattcaaacaactTTGTGAAACTACTAACATAACTCTGCAAGAGAAACTAAAGAACGTTGTAGATAAACCGCACTTCACAATAGATATTCATCCTACAATGATTATTCAAGAACATGTTGATTTGATGAAAACTGATGTTGTAGACACAACTGTAACGAGAAACGTGGCAGATACTGAAGGCAATTCTTCTCATAATTACAAGTGTGCCAAGCAAGAAGATTTAGAGAAAAATACTACTGAATCCAGTATCACAACTGATGATGAAAACACGGTACCCGTGACTGAAGTCGAAATCATTACAGTAAAACATGAAAATTTCACTGATAATGAGCGTGAAGAGTCTCGGGAAAATAAGTACACATGCCCTCTTTGCACAGAATGTCTGGAAGATGTCAAGGAATTTACCGGACATTTATCGTGGCACGCTCAGAACtcaagaaataaagaaaagcGCCTCATTTGTGAACTGTGTTCTAAAGTATTCAAAAAAATGAGTCATTTATCTAGACATTACATGGTTCATGTATGCAAACCTTTTCAATGCTTGGATTGTCACAAAAGGTTTAAATGGTATGAAGAATACCAGGGTCATATGAAGACCCATCAAGGAGTAAAAAGACCTTATGATTGTTCAATTTGCAACAAagCTTTTAATCAAATGTCCAATCTGAAGGATCACATGCGAACGCACACTGGCGATCAACCTTACTTATGTGCAACGTGTGGAAAGGGTTTCAATCAGTTGGGAAACTTAAGACAACATACTATTCGTCATACGGGAGTAAAGTCAcatgtatgtaatatttgcGGAATAGGTTTCGCGAGTAAAGGAGAATTGGGTGCACACACTCGAAGGCATACAGGTGCGCGGCCATATTCATGCCCAGATTGTAAAAAGGCATTTACAACATCAAGTTCATTGAAGAAGCACATCCGTATTCACTCCGGTGAAAAACCTTACGAATGCGATATCTGCCATATGCGGTTTTCACGGTCCGGTATTCTCAAACGACACAAACGAGTCCACACCGGGGAGAAACCCTATGTTTGTACCCACTGCTCCAAGGCATTTTCGCAATCGAATGATTTAGCGTCACATTTGCGAATTCACACCGGGGAACGGCCGTACATTTGCGATACTTGTGGTCAATCTTTTAGACAGGGCAGTGCGTTAAAAACCCATCAAAAAGTACACGATGAAGGTAGGACTAAACACAGGAAACAATCAGGTTTGATGGAAACTGCCGTTAAAGAGCAACAGAAGAACGAGGATGCCGAAGAAGTACTGGTTGATACCGAAATCGTTGAAACGATAGAAACGGCAAAATCGGATATTTAG
- Protein Sequence
- MEITELCRTCMDTVGPFKPLFSKDLPLSTMIMSYTNLQLLPDDGLSHKICECCAKKAVELFEFKQLCETTNVTLQTKLKHNTKVKFKIEIGPAFSLQDHIELIENDAFAYGNLKTSSEGKIYHTCDICSASFPCHDDLINHELKEHVNFSTNCYDTNGLESLTENKPKERVQPSVTEELYKCLLCKEDETERNESDLKEHLMWHARELRKRKKGLICEFCSSKSRKLCELVIHYFRHIKNPYRCAECKKKFKILEDYENHLKVHLGVKKAYKCSLCPKAFSSQYNLKCHTRLVHNGDEKFSCATCGKGFIQFHALKLHIMSHVGNEASKLHVCSLCNKRFGTNTQLNNHLRGHSDDRPFVCSTCGKTFKLVASLDRHILIHTGEKRYECELLPDDGLPDKICEPCAMRTVEMFQFKQLCETTNITLQEKLKNVVDKPHFTIDIHPTMIIQEHVDLMKTDVVDTTVTRNVADTEGNSSHNYKCAKQEDLEKNTTESSITTDDENTVPVTEVEIITVKHENFTDNEREESRENKYTCPLCTECLEDVKEFTGHLSWHAQNSRNKEKRLICELCSKVFKKMSHLSRHYMVHVCKPFQCLDCHKRFKWYEEYQGHMKTHQGVKRPYDCSICNKAFNQMSNLKDHMRTHTGDQPYLCATCGKGFNQLGNLRQHTIRHTGVKSHVCNICGIGFASKGELGAHTRRHTGARPYSCPDCKKAFTTSSSLKKHIRIHSGEKPYECDICHMRFSRSGILKRHKRVHTGEKPYVCTHCSKAFSQSNDLASHLRIHTGERPYICDTCGQSFRQGSALKTHQKVHDEGRTKHRKQSGLMETAVKEQQKNEDAEEVLVDTEIVETIETAKSDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -