Abil004419.1
Basic Information
- Insect
- Aleochara bilineata
- Gene Symbol
- -
- Assembly
- GCA_003054995.1
- Location
- NBZA01001428.1:5327-6269[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-10 1.4e-06 27.8 0.0 1 43 11 53 11 55 0.91 2 2 2.2 4.7e+03 -2.7 0.0 15 22 135 141 134 141 0.86
Sequence Information
- Coding Sequence
- ATGTCAAAAAGAAGACAATATAGACAATGGTCTGAAGATGATCTGTTGTTAGCTCTTGCTGCATTAAAAAATGGTGAATGTGGTTTGAATGAATGCAGCCGTCGGTATGGAGTTCCTAAACCTACCCTCAAAAGGCATGCTGACGTTAGCAATAAACTTAAACCAATGGGTAGACCTCCAATATTTTCCGAAGATGTGGAAAGAATTATTTTGGAAAATATTGTCCAGCTTAAAGAATGCTTTTTTGGCTTATCAACTAAAGAAGTAAGAAAACTAGCTTTTGATATCGCAGAATCTTATGGCTCACctcataattttaataaagatAACAAAATTGCTGGTAAAAAATGGTTCTATGCGTTCTTAAAGCGAAATCCAGATCTATCGCTTCGGAATCCCGATGGAATGTCAACTGCGAGAGCCAAAGGCTTGACTAGGGCGAACGTGAATCATTTTTTCGATGTCTTGGAACGGATTGTCGATGAACATCAGTTTACAGCCAACAGTATATTTAACGTGGACGAAATTGAGCTCACTTCGGTGCAAAAGAATCTCTCAGAAAAAGTTGCACCTAAAGGAAAGCAGCAGGTAGGAAGTGTACCAAGTGATGAACGTACAACGATGATATGCGCAGTTAGTGCTGCTGGGGTATATATTCCACCAATGATAATTTTCAAGAGAAAGAAATGTCACCCTCATCTTAAAATTGGAGCACCACCTGCCAGTATTGTTACTGTTTCGGAAACGGGATACATAAATTCAGATCTTTTTGTTGTGTGGCTGAAACATTTCCATAAGTTTGTGAATTTGCTAAGAAAAATGGAATTGTCTTACTTCAACTGCCTGGCTATGCCACTCGCCGTTTAA
- Protein Sequence
- MSKRRQYRQWSEDDLLLALAALKNGECGLNECSRRYGVPKPTLKRHADVSNKLKPMGRPPIFSEDVERIILENIVQLKECFFGLSTKEVRKLAFDIAESYGSPHNFNKDNKIAGKKWFYAFLKRNPDLSLRNPDGMSTARAKGLTRANVNHFFDVLERIVDEHQFTANSIFNVDEIELTSVQKNLSEKVAPKGKQQVGSVPSDERTTMICAVSAAGVYIPPMIIFKRKKCHPHLKIGAPPASIVTVSETGYINSDLFVVWLKHFHKFVNLLRKMELSYFNCLAMPLAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -