Basic Information

Gene Symbol
stc
Assembly
GCA_963565655.1
Location
OY751414.1:4693027-4696527[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 2e+04 -4.2 1.6 15 19 393 397 392 397 0.81
2 15 0.12 1.1e+03 -0.2 0.3 4 10 426 432 425 433 0.94
3 15 7.2e-06 0.07 13.3 11.4 4 19 443 458 441 458 0.92
4 15 4.9e-07 0.0048 17.0 11.1 1 18 494 511 494 512 0.97
5 15 0.42 4.1e+03 -2.0 1.4 5 10 539 544 539 544 0.96
6 15 3.4e-08 0.00033 20.7 17.8 1 19 550 568 550 568 0.99
7 15 0.93 9e+03 -3.0 0.7 5 10 597 602 597 602 0.94
8 15 0.00037 3.6 7.8 14.1 4 19 615 630 608 630 0.86
9 15 1.4 1.4e+04 -3.6 2.0 5 10 659 664 659 664 0.93
10 15 0.0034 33 4.7 11.4 1 11 670 680 670 692 0.88
11 15 3.3e-10 3.2e-06 27.1 12.7 1 18 697 714 697 715 0.97
12 15 0.4 3.9e+03 -1.9 1.0 5 10 743 748 743 750 0.91
13 15 1.6 1.6e+04 -3.8 8.8 10 19 762 772 754 772 0.78
14 15 9.8e-07 0.0096 16.0 10.4 1 16 808 823 808 834 0.86
15 15 2e-05 0.19 11.9 13.0 1 19 840 859 840 859 0.97

Sequence Information

Coding Sequence
ATGGCCACCTGGGACGGTTCGTACCAGGGTGGTTCACACGAGGATCCAAATTACTACTACACAAATCCTCAAGAACCACCCCAGAACAACTGGTACAATTATTATCCACCCCAGGAGACAAATGTCCAATCAGCTCCGGTAAATGGCTATCAGAACAGCACAAATGCTTCCTGCTTCTTCGAGAACAATCGCTCCACTTATTATCAACAATCCGAGAATTCTGAACGCTCACGTAATGTCAATCCAACGGCAATTGTCAATCAATCAAACTTGCACCCTGGTGCAGATGAGTTTGTGCCGTCTCCAGGTGGTCTAGACCAATCAAAGATCTTCTTCGCTGACAACAGAAATCGCAACAGAAAGTATGATAATAAAAGGAGCAATCAATACTCGAGACAGGATGATTACCAGAGGAATTACAACAGAGGTGATAAGAATCGTAGgcaaaataattccttttacAATACAGAGTACGAGGGACAGAATTATTCTAATCCAACGAATTATGAAGATGAGGTGACGAATAATGTGCAGAAGGAGTCGACGAGAGGTGCGTATAAGAACAGAAGAGCCAGAAGTCATGGGAGATTCCAGAATGGAAGATATAATAATCAGGTTAATTCGCCTAACGATGGTGGTACTACCTCGAGATCTGGTAATTCAGGGGATAACGACAATCAGAGAATGGGAAAATCACGGCAGAAGTACAGAGAGTACAGTGATGATCCAAGGGATGAGGCTTATCGCAGGAATCCACAGGTTCCAGAGGCAGATGAAGGTGGGAGGAACGAACGACGACGAGGAAAACACGATTTTTACGAGGACAAGTCGTCGAGGAAGGAGAGAAGGAAGAATTATCATGATTACAATGGTTATAAGAATTATTCTGATAAGAAGGAGGATGAGAAGAAAGAGGGAATCAGCGATGAGAAGAATTGGCGTAAGAATCAGGTGCCTTTTAAGCGACCACAGAAGAAGCAGGAGATCGATGATGCAGCTAGCCAGAAAGAGAGATTAACGGATCAATTGAATAGAGGACAATTGGAGTGTCTCGTCTGCTGTGATTATATTAGGCAGAATGATGCTACATGGTCTTGCATCAGCTGCTATCATGTACTCCACTTGAAGTGCATAAGAAAATGGGCGGAATCTTCGCAGAGCGAGAGTGGCTGGCGCTGTCCAGCCTGTCAGAACATGAATTTAGCAGTACCAAATGATTATTACTGCTTTTGCGGTAAAACGAGAGATCCAGAATGGAACCGAAGAGATGTTGCTCATTCGTGCGGTGAAACATGTGGCAGGACAAAGGCAAAGAATAACTGCGTACACAAATGCACATTACTTTGTCATCCTGGCTCGTGTCCACTTTGTACAACAATGGTGACAAGATTTTGTGGCTGCAGTAGAACATCACAGAGTTTAAAATGCAGCACCGATGTACAATTATCGTGCGATGCTATTTGcgatagagaattaaattgcgGTGTTCACAGATGCGAGAGAAAGTGCCACAACGATGATTGTGGTAGttgtgataaaataataatacaaaattGTCACTGCggtaaagagaagagagaagttACTTGCTTGAAGGATACACCAGAATTATTTACGTGTGAAAAAATATGCGATAAATTACTGGAATGCGGTAATCACAGATGCAAGGAGCAGTGTCATCCAGGTGAATGTGGTACGTGTCCATTGAATCCAGAGATCGTGACAAATTGCTGCTGTGGACAGAGTAAAATAACAACGAAACGTGATAAATGTACTGATCCAGTACCAACGTGTGATAAAATATGCTCAAAATTATTGCGTTGCGGTCAACCGAGTAATCCGCACACGTGCGAATCAGAATGTCATCCTGATGATTGTCCACAGTGTCAATTAACCACATGGGTCAAGTGTAGATGTGGTAATATGGATCGTGAGATACCGTGTACTGACTTGAAAACTAAAGCGGACGATGCTAGATGTGAAAAGAAATGTACGAAGAAACGTTCATGTGGTAAACACAAGTGTAATCAATTGTGTTGCATTGACATCGAGCATATTTGTCCATTACCATGCTCCAAGAACCTCAGCTGTGGCAGGCACAAGTGCGAACTGACTTGCCACAAGGGTAGGTGTCAGCCTTGCTACAGAAGCAGCTTCGAGGAGCTCTATTGTGAGTGTGGAGCAGCTGTTATTTATCCACCGGTGCCTTGCGGCACGAGGAAACCAACTTGCACCCAGCCTTGCTCCAGACAGCATCCCTGCGGTCATGAGGTGCTGCACAATTGCCACAGTGAGGCCAATTGTCCACCATGCACTGTCTTGACCCAGAAATGGTGCTATGGTAAGCACGAATTGAGGAAGGCCGTTCCATGCTATCTGAACGAGATGTCTTGTGGTTTGCCCTGTGGAAAACCGATTTCTTGCGGCAGACACAAGTGCATAACGCTCTGTCATCCTGGGGTCTGCGAGAAGCCTGGACAAATCTGTACGCAGCCGTGCACAACACCCAGGGAAATATGTGGGCATCCGTGTGCTGCTGCTTGTCACAACGGCAAGTGTCCTGATGTACCATGCAAGGAATCAGTTAAGGTCACTTGTGCATGTGGACACAGGAGCACGACGAGAGTTTGCGCTGAGAATTCAAAGGAGTATCAGAGAATTGCCAGTGGTATTCTCGCTAGTAAAATGGCTGATATGCAGCTGGGACACTCGGTCAATCTTGAGGAGGTCTTCGGCCAAGGGGCGAAGAAGCAGAATCAGCTGAAGACACTTGCCTGTAATGATGAGTGTGCTCTTATAGAGAGAAACAGGAAACTAGCACTTGGATTGCAGATCGTTAATCCTGATTTGAGTGGGAAACTCATGCCGAGATACAGTGATTACATGAAACAGTGGGGCAAAAAAGATGCCAATTTCTGTCAAATGGTGCATGACAAGTTGACGGAGCTTGTGCAACTCGCTAAAACATCGAAGCAGAAGAGTAGGAGTTATTCGTTTGATAGCATGAATAGGGATAAGAGACACTTTGTTCATGAGGCTTGCGAACACTTTGGGTGTGAGAGCCAAGCTTATGATCAAGAGCCTAAACGGAATGTTGTTGCTACTGCTGTTAAGGACAAGtGTTGGTTACCAAGTTATAGTTTGCTTGAGATGATTCAGAGGGAGAATGGCCAGAGAAAAGTGCCGAGACCAATGCTCAATTCTGTGAGGACCAACACTTTAAGTACACGTAATTCTACTTCAGAAATTCTGCCATCAACTGCCAAAATGGGTCAAAAGCTCCAGCCAATAGCTTCCACATCGAAATCACCAGAGCCAGAGATTGATTACTTTGACTTTCCAAATTCCAAGCTGAATAATacgtaa
Protein Sequence
MATWDGSYQGGSHEDPNYYYTNPQEPPQNNWYNYYPPQETNVQSAPVNGYQNSTNASCFFENNRSTYYQQSENSERSRNVNPTAIVNQSNLHPGADEFVPSPGGLDQSKIFFADNRNRNRKYDNKRSNQYSRQDDYQRNYNRGDKNRRQNNSFYNTEYEGQNYSNPTNYEDEVTNNVQKESTRGAYKNRRARSHGRFQNGRYNNQVNSPNDGGTTSRSGNSGDNDNQRMGKSRQKYREYSDDPRDEAYRRNPQVPEADEGGRNERRRGKHDFYEDKSSRKERRKNYHDYNGYKNYSDKKEDEKKEGISDEKNWRKNQVPFKRPQKKQEIDDAASQKERLTDQLNRGQLECLVCCDYIRQNDATWSCISCYHVLHLKCIRKWAESSQSESGWRCPACQNMNLAVPNDYYCFCGKTRDPEWNRRDVAHSCGETCGRTKAKNNCVHKCTLLCHPGSCPLCTTMVTRFCGCSRTSQSLKCSTDVQLSCDAICDRELNCGVHRCERKCHNDDCGSCDKIIIQNCHCGKEKREVTCLKDTPELFTCEKICDKLLECGNHRCKEQCHPGECGTCPLNPEIVTNCCCGQSKITTKRDKCTDPVPTCDKICSKLLRCGQPSNPHTCESECHPDDCPQCQLTTWVKCRCGNMDREIPCTDLKTKADDARCEKKCTKKRSCGKHKCNQLCCIDIEHICPLPCSKNLSCGRHKCELTCHKGRCQPCYRSSFEELYCECGAAVIYPPVPCGTRKPTCTQPCSRQHPCGHEVLHNCHSEANCPPCTVLTQKWCYGKHELRKAVPCYLNEMSCGLPCGKPISCGRHKCITLCHPGVCEKPGQICTQPCTTPREICGHPCAAACHNGKCPDVPCKESVKVTCACGHRSTTRVCAENSKEYQRIASGILASKMADMQLGHSVNLEEVFGQGAKKQNQLKTLACNDECALIERNRKLALGLQIVNPDLSGKLMPRYSDYMKQWGKKDANFCQMVHDKLTELVQLAKTSKQKSRSYSFDSMNRDKRHFVHEACEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEMIQRENGQRKVPRPMLNSVRTNTLSTRNSTSEILPSTAKMGQKLQPIASTSKSPEPEIDYFDFPNSKLNNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00046640;
90% Identity
iTF_00046640;
80% Identity
-