Basic Information

Insect: Aleiodes testaceus
Gene Symbol: RpS26
Assembly: GCA_963565655.1
Location: OY751418.1:4689114-4693880[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.051 4.3 8.1 0.2 3 23 114 135 113 136 0.95

2 16 0.0033 0.28 11.8 1.4 2 23 140 162 139 162 0.94

3 16 0.0018 0.15 12.7 0.8 3 23 248 269 246 269 0.94

4 16 0.015 1.2 9.8 0.2 1 20 279 298 279 299 0.94

5 16 0.00063 0.053 14.1 2.6 1 23 305 328 305 328 0.97

6 16 0.042 3.5 8.4 1.0 2 23 342 363 341 363 0.93

7 16 0.093 7.8 7.3 6.0 1 23 371 394 371 394 0.95

8 16 0.00037 0.031 14.8 6.0 1 23 400 422 400 422 0.98

9 16 0.0076 0.63 10.7 0.4 2 23 426 448 425 448 0.94

10 16 0.0026 0.22 12.2 5.3 1 23 458 480 458 480 0.97

11 16 0.00019 0.016 15.7 0.8 2 23 487 508 486 508 0.97

12 16 2.5e-05 0.0021 18.5 3.9 1 23 513 535 513 535 0.97

13 16 0.00017 0.014 15.9 0.3 1 23 543 565 543 565 0.99

14 16 8.6e-06 0.00072 20.0 0.2 1 23 756 779 756 779 0.94

15 16 0.002 0.17 12.5 4.2 1 23 787 810 787 810 0.96

16 16 0.77 65 4.4 0.9 1 13 815 827 815 832 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.051	4.3	8.1	0.2	3	23	114	135	113	136	0.95
2	16	0.0033	0.28	11.8	1.4	2	23	140	162	139	162	0.94
3	16	0.0018	0.15	12.7	0.8	3	23	248	269	246	269	0.94
4	16	0.015	1.2	9.8	0.2	1	20	279	298	279	299	0.94
5	16	0.00063	0.053	14.1	2.6	1	23	305	328	305	328	0.97
6	16	0.042	3.5	8.4	1.0	2	23	342	363	341	363	0.93
7	16	0.093	7.8	7.3	6.0	1	23	371	394	371	394	0.95
8	16	0.00037	0.031	14.8	6.0	1	23	400	422	400	422	0.98
9	16	0.0076	0.63	10.7	0.4	2	23	426	448	425	448	0.94
10	16	0.0026	0.22	12.2	5.3	1	23	458	480	458	480	0.97
11	16	0.00019	0.016	15.7	0.8	2	23	487	508	486	508	0.97
12	16	2.5e-05	0.0021	18.5	3.9	1	23	513	535	513	535	0.97
13	16	0.00017	0.014	15.9	0.3	1	23	543	565	543	565	0.99
14	16	8.6e-06	0.00072	20.0	0.2	1	23	756	779	756	779	0.94
15	16	0.002	0.17	12.5	4.2	1	23	787	810	787	810	0.96
16	16	0.77	65	4.4	0.9	1	13	815	827	815	832	0.87

Sequence Information

Coding Sequence: ATGGAGGCTGATAAACCCCTGAGAACTTGCAGATTGTGTGCCAACAATGGACCAAATTTTCGGGCTATTTTTaggggaaaagagaagaatgagatAGCTGATAAAATATCAAAGTGTTTACCTATATTGatcAGTTCAAATGATGAATTGCCTGGGCACATATGTCCCCTGTGTCTCCGTTCTCTAAATATAAGTTACAAGCTCCTGATAAAAGTAATAGAGACTGATGAAAAACTGAGACAACAATTGTCACAGTCACGTGCCGATGATAATCCTCAAAATTACGTCCTAAGATCCCATAATGAATCAACTGAAATCGAGAAGAACGAACCAGGAATCTGTGGATTCTGTGAAATACGATTCGTCGATGCTGTTGCATTTGACAGTCACATGGAGACGTTTCACCATTCGCAATGGGTCTGCAATCTCTGTCAGAATTCATTTGCGACGTCCGATGAATTATTGCAGCACAAACACAAGACACATTACGAAAATGTGAATTCTGGAGAAGACTGTAATGATTCCGGTCTCATTGAcataaaagaggagagaatatCGGCATCTGAGCACTCGGACACTGAGCCCCCTGATCCAAAGAAAACGAAGAAGAGAAGAGCTTccaagaagaaagagaaaatggaggagaaaatcGTGAGCGTTGATTGCCCAATTTGCAACGTTTCAATTGACGAGGCTTTCATGCCTGAGCACAAGCAGATACACGAACCCTTTGAACTCTTCTGCACAAGGTGCAGAACGAAATTCCCGAGTGCTTATGATCTCATAAAACATAAACGTGAAGTTCACGATTATTTCACTGAAAGAATCATCAGGTACTTCTGCAAAATCTGTAACAGAATGATGACGGATTCAAAGGCACTCAAAGCCCACGagaattgtaataaattgAGACACACGTGCAAGTACTGTGATGCAAAATTCAACGTGAAACAGCTGCTGAGGCTGCACCTGAATAAAGAGCATCGAGAGAAGATGATGGAGGACAAGGATGTAGAGAAATTAGAATGCGGCAAgtgtaaaaaattgtttgtgGATAAAAAAACCTTCTATGATCATGTTTATCTTCATGGAAGACAATTAGTATTTCGATATCACTGTCAATTCTGTCCGAGGCACTTTGGCAGCTGTTCCTCGATGAAGAATCATGTGGAGAgtgttcatgaaaaatcattgaaatacaGATGCCTCacttgtaataaaaaattctataataaGAAGAATCTTCatactcatgaaaaaattcatgtgaaactCAATTGTCGATACTGCAATGAGAAATTTGAGACTGTGGATCTTGTTCAGAAGCATTTGGAGAGAGAACACAGTGTGCCAATTAAAGTTAAACGATTGCACACGTGTCCACATtgtaataaacaattttccagGCGAAGCATAATGGAGGACCACAAGAATACACATAGTGGAGAAACTCCGCAGAGTTGCAAAATTTGTGGGAAACAATTCAgGACTTATGCAGCACGCTGGAATCATCAACAGAGTCATACGTCCAATGGCTTTTTCTGTGATTACTGTCAAAGGAAATTTGTATATAAAAGGCATTTAAAAGCCCACATTCAGGTGCACATGCCTCCGGAGGACTGGAAATACGTATGCGAATTATGCAGTATGCGTTATCCACAAGGCTATCAACTTGCGAATCACATGAGGAGGCATACTGAGACTACTGATAAACATTACAAAAAGGGCTTATCGAGATTTGAGACTGATTGCGAGACAGCAGAGACTGAAGAAACTCATCAAGATTACgttaattatccaattttagAGAAATCCCTGAAAATCGTATTGGAAAGACTACCTGATAATTgcaataacaataatgataatgagttTGAACAAATTCTgttgaaagaagagaatttcgATGCGAATGAAGACGAGGCAGATGCAGATGCATCTTTTGAGTCAATCGATGATCAGAAAAACGAATTTGAAGAGATTTACATAAAGATTGATGACGAATTCTTAATGcctgaggaaaaattcatggaagaAGCATGTGATCGTCCGAAGAAACGTCGGGGGAGACCGAAACGAGTGTTTTCCTTTCAAGATTCGGATCATGAGGAAGAGGACAAGAAGGATCGTtataattttagaaaaaaagacgataattacaggaaaaaaatcaaggatattattgaaatattcgagGCTGAGGATGAAATGGAAGAACCGAAATTGccggaaaaaagggaaaacttgattaataaagagaattcattCCCTTGTTTAATTTGCGATAAAATCTACAGGAGAAGATCTGGACTGATGAAGCACATGGATCAAGCACACGAGTCCCCAAAAGCCTGGAAGTACAAGTGCAAAATGTGCGATGAGAGATTTTCACATATTACATACTATTACAAGCACAAAAGAGCTGGACATCGTGGTCGTCCTTATGTCTGCAACATTTGTGATAACagattctataaaaaaaGAAAGCGTAGGAATGGTGGAAGGGCCAAACATGGTCGTGGCCATGTTAACCCAGTTCGTTGCACCAACTGCGCCCGTTGTGTACCTAAGGACAAGgcgattaaaaaattcgttattcGTAACATCGTTGAGGCTGCTGCTGTGAGAGACATCAACGATGCCAGTGTCTATGACACATATCAGCTCCCCAAACTATATGCAAAGTTGCACTACTGCGTATCATGCGCAATTCACTCCAAAGTAGTACGTAACAGATCCAAGGCAGATCGTCGTATCAGGACACCGCCACTCCGCAACTTCCCGAGGgACATGCGCCAGGGACCCCAGCAGAACAGGAAGTAA
Protein Sequence: MEADKPLRTCRLCANNGPNFRAIFRGKEKNEIADKISKCLPILISSNDELPGHICPLCLRSLNISYKLLIKVIETDEKLRQQLSQSRADDNPQNYVLRSHNESTEIEKNEPGICGFCEIRFVDAVAFDSHMETFHHSQWVCNLCQNSFATSDELLQHKHKTHYENVNSGEDCNDSGLIDIKEERISASEHSDTEPPDPKKTKKRRASKKKEKMEEKIVSVDCPICNVSIDEAFMPEHKQIHEPFELFCTRCRTKFPSAYDLIKHKREVHDYFTERIIRYFCKICNRMMTDSKALKAHENCNKLRHTCKYCDAKFNVKQLLRLHLNKEHREKMMEDKDVEKLECGKCKKLFVDKKTFYDHVYLHGRQLVFRYHCQFCPRHFGSCSSMKNHVESVHEKSLKYRCLTCNKKFYNKKNLHTHEKIHVKLNCRYCNEKFETVDLVQKHLEREHSVPIKVKRLHTCPHCNKQFSRRSIMEDHKNTHSGETPQSCKICGKQFRTYAARWNHQQSHTSNGFFCDYCQRKFVYKRHLKAHIQVHMPPEDWKYVCELCSMRYPQGYQLANHMRRHTETTDKHYKKGLSRFETDCETAETEETHQDYVNYPILEKSLKIVLERLPDNCNNNNDNEFEQILLKEENFDANEDEADADASFESIDDQKNEFEEIYIKIDDEFLMPEEKFMEEACDRPKKRRGRPKRVFSFQDSDHEEEDKKDRYNFRKKDDNYRKKIKDIIEIFEAEDEMEEPKLPEKRENLINKENSFPCLICDKIYRRRSGLMKHMDQAHESPKAWKYKCKMCDERFSHITYYYKHKRAGHRGRPYVCNICDNRFYKKRKRRNGGRAKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYDTYQLPKLYAKLHYCVSCAIHSKVVRNRSKADRRIRTPPLRNFPRDMRQGPQQNRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -