Ates007946.1
Basic Information
- Insect
- Aleiodes testaceus
- Gene Symbol
- -
- Assembly
- GCA_963565655.1
- Location
- OY751418.1:3376189-3378567[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.8e-05 0.0032 17.9 3.0 1 23 342 364 342 364 0.98 2 12 0.0031 0.26 11.9 3.7 1 23 368 390 368 390 0.98 3 12 2.2e-05 0.0018 18.7 4.6 1 23 395 417 395 417 0.96 4 12 0.0012 0.1 13.2 5.7 1 23 460 482 460 482 0.97 5 12 0.00085 0.071 13.7 1.4 1 23 487 509 487 509 0.97 6 12 0.0007 0.058 14.0 1.7 1 23 557 579 557 579 0.98 7 12 0.00025 0.021 15.4 0.9 2 23 587 608 586 608 0.97 8 12 1.1e-06 8.8e-05 22.9 2.1 1 23 619 641 619 641 0.96 9 12 6.6e-05 0.0055 17.2 1.0 1 23 647 669 647 669 0.98 10 12 0.00017 0.014 15.9 0.7 1 23 675 697 675 697 0.98 11 12 5.1e-06 0.00042 20.7 2.0 1 23 703 725 703 725 0.96 12 12 9e-05 0.0076 16.8 0.3 1 22 731 752 731 752 0.96
Sequence Information
- Coding Sequence
- atgagCGTTAATTACTTTGAATTACCAGTTAACATGGAACGTGCATGCAGAATATGTTTGACAGAATCaacaaatttatcatcaatattctGTAATGAACAGAGTGTAgatgatttttcaagtttatcacaaaaaattcaacaatgcGGTGCAATTGAAGTACATGAGAGAGATGGATTACCATCATTAATATGTGATGTATGTATTTATAAAGCAAGTGTTGCTCATGAATTTCGCCAACAGTGCCAGAATTCAGATGCCAAACTTCGTCTTTATTATGATAAACCATTGCGTACAAATGCCATTGATACGAGTACACAAACTGAATCAGAGATACATATTATTGTAGCTAAAAAAGTTGATAATGCACAgcaaaattattttgttaaacAGGAGATACAAAATATTGATCAagaattgagtaattcaattgatGTTTATACACAGAATCATGAGACTGTTGTTGGAACTAATGAAATGGAGACAgaggataaattatttctctgtCAAATTGGATTCAGTGATTCTAAGGAAATGGAGAAAGGAACTGTTATACTCGAGGCACATGCAGAGGTTGCTCCTTGTTCACCAAGAGAGACGCAGGTGATTTTGGAGGTTCCAAATGACGTTGAGGAACGTCTTCAGGAGACTGAGGAAACGATAACTGAGATGAAATCGAGTGAAGAAGTGCAGTTTCTCAATGAGCACCTGTTGACGTCGACTGAGGGTGGAGAAGAGGATGAAGAGAGGATATTAACCAGTGGAAGTCtagaagatgatgatgatgaagatgaagacGATGATGACGACGATGGAGATAATGTGGAAGGAGTGACAGAATTGGAGCACGAGCAGGAGGAGCAACTAGTGGAAAACGAGGAAATTCATGCACCAGAAGAGGCACTCCCAAAGAGATCAACGAGAAAGGCAAAACCGAGTGCAGGAAAGTCTTACCAAGTCGATGAAATAGACGCTGAGTTCCAGGACTTTGGGGACGATGACATTGATTCAGAAGAGCCCAAATTCAAGTGCAAAGTGTGCCAGAAGAAGTACACGACACAGAAGGgcctgaaaaatcattcacaagTACACGATAAAAAGCACAAGTGTCCCACGtgttcaaaattattttacaaattaGAGAATATGGAGAAACATAAGAAGATACATGATACAAAGCCACATGCATGTCAAATATGTCACACGTGTTTTGCAAAGCCTGGGAGTCTCGTTAGACACATGAAGACGCATGATAAACAGAGTGTGGAGTTGACTGGGGATAATGGCAAgaaaattgcgaaaattgataataattcggATGACGAGGATGATGCTGGTGGTAATGAGCACGATGAGTTTGAGAATGCACCTGGTTTATATAAATGCGACGTCTGTCATCAATTTTGCTCATCATTGAAGAACCTGAAGAGACACTCGCTGGTTCATGGAGAGAAAAAGTACTCGTGCACAGTTTgtaaaaaatggtttttccgACCGGATACATTGAAGAAACACGCTGAAAAACATGGGCATGGTCTCCTCGATAATTTAGTAgatgaaaacaaattatttgattctGACGACGATGGATTCCCCAGTAATTCAACCAGtgtcaatgataattcaagcAAACGTGATGAGAGTGACGAGGATGGTGCATCTGGTGAATACAAATGCCAGCATTGTGACAAAGTCATGGCAACAATGAAGGGCTTGAGGAGACACGTATCAATGCACAAACCAAAAGCAGAGCCAGTCACCTGTGAGATTTGTAAAAAGGTATGTGCAAGTCAGGCGCGATTAGCGTTGCATCAAAAGACTCACAACAAACCAAAGGAAAAAGTACcacgtgaatatctctgtCATATCTGTAGTAAAGTTTATCCAAGTAATTCATCATTGACTTACCACATGAGAACACACACTGGTGTTAAGCCGCATGTTTGTAAAATTTGTAACAGTGGATTTACGACTACAACGAGTCTAGCAAATCACATAAGGATTCATACTGGTGATAAGCCATTTGTATGTCATGTTTGTAGTGCCGCTTTTGCtgtgagctcagcattcagaCGGCACTTGACGAGACACACTGGGGAAGCTAATTATCTCTGTAAAACTTGTGGCAAAGCTTTTAAACGTTTGAGCACTTTGAAGGAACACACTTATACACATTCTGGGGAAAAACCGTATGTTTGTAAAACATGCGGAGCTGCTTACAGTCACTCTGGATCATTATTCGCTCATCAGAAACGCTGTCGTGCTCAGTATGGGGAAATTGTTGCTGAAGAACATCACAACGTTGTCTCTCATCATATTCATGTTAATAATGTGCAGACAGCTGTGAGATCACTCGCTGTTATTGGACAGATGttctaa
- Protein Sequence
- MSVNYFELPVNMERACRICLTESTNLSSIFCNEQSVDDFSSLSQKIQQCGAIEVHERDGLPSLICDVCIYKASVAHEFRQQCQNSDAKLRLYYDKPLRTNAIDTSTQTESEIHIIVAKKVDNAQQNYFVKQEIQNIDQELSNSIDVYTQNHETVVGTNEMETEDKLFLCQIGFSDSKEMEKGTVILEAHAEVAPCSPRETQVILEVPNDVEERLQETEETITEMKSSEEVQFLNEHLLTSTEGGEEDEERILTSGSLEDDDDEDEDDDDDDGDNVEGVTELEHEQEEQLVENEEIHAPEEALPKRSTRKAKPSAGKSYQVDEIDAEFQDFGDDDIDSEEPKFKCKVCQKKYTTQKGLKNHSQVHDKKHKCPTCSKLFYKLENMEKHKKIHDTKPHACQICHTCFAKPGSLVRHMKTHDKQSVELTGDNGKKIAKIDNNSDDEDDAGGNEHDEFENAPGLYKCDVCHQFCSSLKNLKRHSLVHGEKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDENKLFDSDDDGFPSNSTSVNDNSSKRDESDEDGASGEYKCQHCDKVMATMKGLRRHVSMHKPKAEPVTCEICKKVCASQARLALHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEIVAEEHHNVVSHHIHVNNVQTAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00047451;
- 90% Identity
- -
- 80% Identity
- -