Basic Information

Insect: Aleiodes leptofemur
Gene Symbol: ush
Assembly: GCA_963942555.1
Location: OZ012609.1:9523520-9529682[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0052 0.78 11.2 0.0 3 20 240 257 238 259 0.92

2 8 2.1e-05 0.0032 18.7 2.2 1 23 289 311 289 311 0.99

3 8 0.1 15 7.1 1.5 3 20 351 368 350 370 0.93

4 8 0.013 2 9.9 4.4 2 21 586 605 585 606 0.94

5 8 0.062 9.2 7.8 0.0 3 20 633 650 631 652 0.91

6 8 0.015 2.2 9.7 0.0 2 23 691 712 690 712 0.95

7 8 0.0081 1.2 10.6 1.4 1 23 718 740 718 740 0.99

8 8 0.086 13 7.3 0.5 3 21 852 870 851 871 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0052	0.78	11.2	0.0	3	20	240	257	238	259	0.92
2	8	2.1e-05	0.0032	18.7	2.2	1	23	289	311	289	311	0.99
3	8	0.1	15	7.1	1.5	3	20	351	368	350	370	0.93
4	8	0.013	2	9.9	4.4	2	21	586	605	585	606	0.94
5	8	0.062	9.2	7.8	0.0	3	20	633	650	631	652	0.91
6	8	0.015	2.2	9.7	0.0	2	23	691	712	690	712	0.95
7	8	0.0081	1.2	10.6	1.4	1	23	718	740	718	740	0.99
8	8	0.086	13	7.3	0.5	3	21	852	870	851	871	0.92

Sequence Information

Coding Sequence: ATGTATGACGATTATCTCGAATTCGGGGAAGACGAGGAATGGAGCGACTCAGAGAAAACTCCGTCAGTGAGCAGTGGAGTAGATGGAGGTGGTTCTGGTGTATCGAGTCCAGCTCCAGCTAACCCTGATGAAGAAAATAGCCTACCGCCACCGCCAAGACTGAACATTATTCCTCAAGGTCTCCTTGGTAATTCGACCGAGGACTTTCGCTTAAGGCTGAGTGTTTTAACCGAGGATGCCAGAAAGAGGATCAATAGTTTTGCTGAAGAGTTTGAGGGTTTGAAACGTGGATTGAAGCCAGACCGTGACTCCTCGAGTCCCAAGTCCTCCCGCAGAGATCACGACTCAAATTCACTTTCGCCAAGAGAGAACGACACACGTCCTCCATCGTTGAGGAGACGTGAGACTCGACGATCATCGGACGACTCAATTCGCTCAGATGATCCAGATCCGAAGAAGTTCCGTTTGGACGAGGAAGCAACTCCCCGACTCCGTCTAAATACAAGTCTCGCGACAGATCCAGCATTACGTCCCGCAACTGTAGCAGCGCTCACGATCAAACCCGACGGTGTTTCACCCCCCGAATCACGCACAAATCCAACGCCACCGCTACCAGCAGGCTTGCAGAATGCAATAGCAGCAGGTCGTCTCTTTGTTCTTCCAACGGACGGCAAAGAGTCAATAACCGTGGAGCCATCACGGCCAATTCCCCTCATCTGTCCTCCATGTGGCATACGTTTTTCCTCAGCAAGTACCCTCGAGGCCCACCGCACATTCTATTGTGCTCATCGTCCTCGTAACGATGACGAAAGTGCCAACGATGATGACGACGAGAAATCAACTAAGTTTGAGTCTCGCAAGGCCTACACCTGCCCTCACTGTTCCTATTCAGCTGACAAAAAAGTCTCTTTAAATCGTCATATGAGAATGCACGCATCATCACCAGCTCCACCAGCACAACCAGCTCCATCGCCAACCGCCCAAGCTGCTTCAGTTCCAGTAACAAATAACACGTCAAACGGTTCACTCAATGAAGAAGCTGAGCGTTACTGCAGAAACTGCGACATAAGATTCAGCTCACTGAGGACATATCGTGCCCACAAAACACACTACTGCAGTACTAGGCACGTCGTCAAGGACACACCAGCTCCCGTATCATCAGCCAAAGCTTCACCACCAGCAAATTCGAGCCCCGGTGATTCACCACCTCCTCAACCATGTTTAGCACTACCCACCAATCCAATTCTCATCGTTCCATGCTCTCTGCTGAGAGGAGCGTCTGTTCTAGCTGCTCCATCGCTACCAGCACCCGATACAGCCTGCTTCCTTCTACCCAATGGATCACTCCAGCCCATGACGAGAGGATTAACTGGACACAACTCGTCTGAAACACCTCAAGTTCTACGGGTAGCTAacaaaagctcaactccagcACCAATACCACCGCCATCAGTAACACCTACGTCTCCATCATCGACTGGTTCATTTCCCCTTGATCTGAGCATGAGACGATCGCCAGTTCATCAAGATGAGAAAGAGAACCGAGTATCACCAGCACCATCATCATTACCAGCTCCACCAGGTAGTCCAAGGTCCCGGGGAAGTGTCAGTCCAAGAACCAGATCATTGCCATCGAGTCAGGCATCATCCGTAGCACCAACAGTACCACCAACGGAATTAGCATTGAGACTTGCTGAATTACCACCGCCACCAGTACCAGGTGGACCTGGTGTTCTCGTTAAACAAGGCGTTAGTAGGTGTAAAGAGTGCAATATTGTTTTTTGCcgtcatgaaaatttcgttgCACACAAGAAGCATTATTGTCAGGCCCGAGAAAATACAGTTTCTAGTCCACCACCAACTGGTACACCATCACCGCCATTAGTTCAGTTAATATGTGCTGCTTGTGGTATTAAATTTGCATCAATGGATAATTTAGTTGCTCATCAGGCATTCTATTGTCCAAAGAGGCCAGAGAGTCAGGAGCATCATACGAGATGTCCAAAGTGCAAGGGAATGATCGAAGCAGGCAGTACGCACACGTGCTCGAGTGGTCCGACAGGTGGGTGGAGGTGTCCAGTTTGTGGTGCAGTTAGTCCGACAGCAGGCGCCGCCCAACGTCATATGGACGCTCATCAGGGTGTCAAAGCATTCAGGTGTACAATATGTCGGTACAAAGGCAATACATTGAGGGGAATGCGAACACACATTAGAATGCACTTCGAGAAACGAGGAACTGATTTACAGGAAGAAAACTACATAACATGCGTTCTGGATGACGACGTGACAGTGCCAACAACCGAGCCAGCACCGGCAACAACTCCCGATGAAATTTCGCCGGAGATTCAAATTAACGGAAAAAGTGAAACACGTAAAAGTCCATTACCCTCATTACCACCTGCACCAACTCCGCCGGTGCAGCAGTCAACCACACCAGCTGCAATTGGTAAAGTTAAACAAGAAAGGGAAGAAACTCCACCGCCTCCACCaccgccaccaccaccacctccACCAGAAGAGAGTCTCGATCCGAACAAAACTGGCCCACGTTACTGTCGCTCGTGTGATATAAGTTTCAACTACCTTAGTACATTTATTGCacacaaaaaattttactgCTCCAGTCATGCTGGTGAAGCTagcaataacaataataataataataacaataataattcaaacagtaataataataattcgaatagTCATACCACTACAAGCCCATCGAGCGGCAGGACCGAGGCTTCCgtactttaa
Protein Sequence: MYDDYLEFGEDEEWSDSEKTPSVSSGVDGGGSGVSSPAPANPDEENSLPPPPRLNIIPQGLLGNSTEDFRLRLSVLTEDARKRINSFAEEFEGLKRGLKPDRDSSSPKSSRRDHDSNSLSPRENDTRPPSLRRRETRRSSDDSIRSDDPDPKKFRLDEEATPRLRLNTSLATDPALRPATVAALTIKPDGVSPPESRTNPTPPLPAGLQNAIAAGRLFVLPTDGKESITVEPSRPIPLICPPCGIRFSSASTLEAHRTFYCAHRPRNDDESANDDDDEKSTKFESRKAYTCPHCSYSADKKVSLNRHMRMHASSPAPPAQPAPSPTAQAASVPVTNNTSNGSLNEEAERYCRNCDIRFSSLRTYRAHKTHYCSTRHVVKDTPAPVSSAKASPPANSSPGDSPPPQPCLALPTNPILIVPCSLLRGASVLAAPSLPAPDTACFLLPNGSLQPMTRGLTGHNSSETPQVLRVANKSSTPAPIPPPSVTPTSPSSTGSFPLDLSMRRSPVHQDEKENRVSPAPSSLPAPPGSPRSRGSVSPRTRSLPSSQASSVAPTVPPTELALRLAELPPPPVPGGPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARENTVSSPPPTGTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKRPESQEHHTRCPKCKGMIEAGSTHTCSSGPTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDDVTVPTTEPAPATTPDEISPEIQINGKSETRKSPLPSLPPAPTPPVQQSTTPAAIGKVKQEREETPPPPPPPPPPPPPEESLDPNKTGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNNSNSNNNNSNSHTTTSPSSGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01274084;
90% Identity: iTF_00046532; iTF_00048245;
80% Identity: -