Alep020791.2
Basic Information
- Insect
- Aleiodes leptofemur
- Gene Symbol
- -
- Assembly
- GCA_963942555.1
- Location
- OZ012618.1:10687164-10694027[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00018 0.027 15.7 1.4 2 23 418 440 418 440 0.93 2 13 3.4e-05 0.0051 18.0 0.1 1 23 447 469 447 469 0.98 3 13 1.1e-05 0.0016 19.6 2.7 1 23 475 497 475 497 0.96 4 13 5.3e-05 0.0079 17.4 2.9 1 23 506 528 506 528 0.97 5 13 2e-06 0.0003 21.9 0.8 1 23 534 556 534 556 0.98 6 13 8.9e-06 0.0013 19.9 2.1 1 23 561 583 561 583 0.98 7 13 0.018 2.6 9.5 6.3 1 23 590 612 590 612 0.98 8 13 5e-06 0.00074 20.7 2.4 2 23 632 653 631 653 0.98 9 13 0.00013 0.019 16.2 0.5 2 23 661 683 660 683 0.95 10 13 0.17 26 6.4 0.2 2 23 689 710 688 710 0.95 11 13 0.00017 0.026 15.8 2.7 1 23 743 765 743 765 0.98 12 13 0.034 5.1 8.6 0.0 1 23 770 792 770 792 0.96 13 13 0.011 1.6 10.2 1.7 1 23 798 821 798 821 0.91
Sequence Information
- Coding Sequence
- ATGAAAGTGGTTTGTGCTGCGCCTACGTGCAAGTACTACTCTGAACATGAAGACtcgaataatattattttcgttAGTTTTCCGAATGATGATACcGCAACAGTATGGGCCCATCACTGTGGTCGACCAGACTTGATGATGAAGTCGAACGAGGAATTACATCTAAATTATTACATTTGCTCGGATCACATCGAGGAAAGGCATTTTTTAAGTAAAacaaatcaaataataataacccAAGGTGCAATACCTACATTGTTTGGCCTCCAAATGCATACGTCAAGGATGAATGATGAATTGAAGTCGCCTTACTCATCAGCCGACGTTATGAATTCATTAGCATTAAGTGATTGCCAATCAAATTACGTAGATgcaaataatgaatatcaAAGCACGGCTCATACTGCTAATTTAATCAATGACAATAACGGAACCACTATTAACAGAAACAACGAAAGTCCAgcgaataataatttaaatttcgatAATATTGATGTCCACATCGAGCAGTTTGATGACGTCACCATGAGATTTGCAAATTTGTGCCGCATCTGTGGTAAAAATATGAGTAATGGAGTCGATATATTTGATAATATGAACAATGGAATAAcaatccatgaaaaaattgaaattcatttgcCAATCGTCGTTGAAAATGGCGATGTGATGCCGCAGAAAATATGTCGCGATTGccatgaaaaattagaaaccTCGCATAAACTCGTGGTGATCAGTCTGGAGAATGATATGAGACttagaaaaatcttcaatttacccAATAAGTATAACAACGAAAATAGATTCCAATCGCTCATAGAAAAAcaggaattattattaacagaAGAAGAACTCCTCGATGGTATTACTACAACACCAAACATTTCAATCGTCTCTGATTGCCAATTAAACAAGAACTCTGATAAGCTCGAGCTGAATCATAAAGATTCACGTTCAAAAGATGTACTTCATGttgatttgaataatttgattctGCAGCCGCTACAGTTGTCGAATGAGGAGAGAGTAAAGACTGATCCACCAAATCCGCAAGTTGTTCTAGCAATTAAACCAGATAATagcaaaattcatcaaatgaaTTGCCTAAAAGTGACTAATCAATTCACGCACTGCGATGATGAACAGttgattataaataaaaatactaCTGGAATAGGGTGCATAGTATTAAATAATAAGCAAGAGAATTTGCATCAAAATGCAATAAAATCTAAGCCACGCGAATCGAACCGACGATGTGGCCACTGCTCCCTATCATTTTCAAACCGCAAACAATTACAAATTCACATTGCCGAGAATCATAATGGAAAGGGAACATTATTCAGATGTGGAATATGCGACAAAACTTATGAAAAGTGGTCGAGTTTGGACGTCCACGAGGCAACTCACAGAGCGGACACACCATACCTCTGTGACTTGTGCGGTAAAAGTTTCAAACACTCAAATAATCTCAGGGGCCATAAGAAAGTTCACTTGGATATAACGAGGAAGAAACGACACGTTTGTGAAATTTGTGGTGATGCATTCCGATCGAGATTCCACCTACGCGAACATATGAACAAACACGATGGAAATAAACCATATGTATGTGAACAATGTGGTAAAGCATTTTCGAAAAGGATACAATTACGCCAGCATCGATTATCCCATGGGGCTAACAAATATTCTTGTACAATTTGTGGTATGACATTTAATCGTAGGGGTAATATGAATACCCATTTCAAGAGACACAGCAACAATAATGGGATGTATACATGCAGTGTTTGTGAATGCAGGTGCAAGTCGATGAGTGAATTGAAAACACACAGAAAAGAACACAgtgagaatgaaattttagaaagCATAAAACGTAAATCAATAGGTAAAGCCATTATGCAGTGTAAAATCTGCAATAAAAGTTTTTCCAAACGTAGATTACTACTGAATCATGAACGGACACATGATGGTGatgatatgaaaattgaatgtaaTGAGTGTGGGAAGAAATTAGCgagtgaaaattcattgagacATCACATCAAACTGATTCATCCATATGAAAGACTAACCTGTGAAGTTTGTGATAGCAAATTCCCGACAGAAGAATTAcgttttattcatgaaaaaattcatgacgGGGAAGCTCAATATTGTTGTCAATTATGTCATTCACAGTACAAATGCTTACGTGATTTGAAAGAACACATGAAGGAACATAATGTTAAACAATACATCTGTAAATATTGTTCGAAATCATTTTTgcggaaaaattcattaacaatTCATGAGCGCAAGCATAGTGAACAATCGTTTGCTTGTTCGATATGTAATATTGTATTGCCGAAGGAAGATGATAtgataaaacatgaaaaaaatcatgaatttcatcaagTATTTGAATGTGAAACATGtggtgaaaaattcaacaaaaaatgtgaaatattGAACCATTTGGAGTTTGTacataaaattgatttgaatgtTTCTGATAACTTTGAACAATACATTGAACTCACTGgcaaatttgataattatacATTAAATGTACCGTGTTGA
- Protein Sequence
- MKVVCAAPTCKYYSEHEDSNNIIFVSFPNDDTATVWAHHCGRPDLMMKSNEELHLNYYICSDHIEERHFLSKTNQIIITQGAIPTLFGLQMHTSRMNDELKSPYSSADVMNSLALSDCQSNYVDANNEYQSTAHTANLINDNNGTTINRNNESPANNNLNFDNIDVHIEQFDDVTMRFANLCRICGKNMSNGVDIFDNMNNGITIHEKIEIHLPIVVENGDVMPQKICRDCHEKLETSHKLVVISLENDMRLRKIFNLPNKYNNENRFQSLIEKQELLLTEEELLDGITTTPNISIVSDCQLNKNSDKLELNHKDSRSKDVLHVDLNNLILQPLQLSNEERVKTDPPNPQVVLAIKPDNSKIHQMNCLKVTNQFTHCDDEQLIINKNTTGIGCIVLNNKQENLHQNAIKSKPRESNRRCGHCSLSFSNRKQLQIHIAENHNGKGTLFRCGICDKTYEKWSSLDVHEATHRADTPYLCDLCGKSFKHSNNLRGHKKVHLDITRKKRHVCEICGDAFRSRFHLREHMNKHDGNKPYVCEQCGKAFSKRIQLRQHRLSHGANKYSCTICGMTFNRRGNMNTHFKRHSNNNGMYTCSVCECRCKSMSELKTHRKEHSENEILESIKRKSIGKAIMQCKICNKSFSKRRLLLNHERTHDGDDMKIECNECGKKLASENSLRHHIKLIHPYERLTCEVCDSKFPTEELRFIHEKIHDGEAQYCCQLCHSQYKCLRDLKEHMKEHNVKQYICKYCSKSFLRKNSLTIHERKHSEQSFACSICNIVLPKEDDMIKHEKNHEFHQVFECETCGEKFNKKCEILNHLEFVHKIDLNVSDNFEQYIELTGKFDNYTLNVPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00048020;
- 90% Identity
- iTF_00047038;
- 80% Identity
- iTF_00047038;