Alep000085.1
Basic Information
- Insect
- Aleiodes leptofemur
- Gene Symbol
- -
- Assembly
- GCA_963942555.1
- Location
- OZ012609.1:486567-497363[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00039 0.059 14.7 3.6 2 21 16 35 15 36 0.95 2 22 0.0027 0.4 12.1 0.1 1 21 67 87 67 88 0.95 3 22 0.0015 0.23 12.8 2.6 1 23 96 119 96 119 0.97 4 22 0.023 3.5 9.1 0.1 2 22 128 148 127 148 0.94 5 22 0.0055 0.81 11.1 2.6 1 21 166 186 166 187 0.92 6 22 0.0019 0.28 12.5 0.2 1 21 216 236 216 237 0.96 7 22 0.0028 0.41 12.0 3.2 1 21 272 292 272 293 0.95 8 22 0.00046 0.068 14.5 1.6 1 23 301 324 301 324 0.97 9 22 0.00037 0.055 14.8 2.2 1 21 376 396 376 397 0.96 10 22 0.00043 0.065 14.6 1.9 1 23 405 428 405 428 0.97 11 22 6.4e-05 0.0095 17.2 1.0 1 21 479 500 479 501 0.95 12 22 0.00027 0.041 15.2 1.8 1 23 509 532 509 532 0.98 13 22 3.5e-05 0.0051 18.0 2.4 1 21 543 563 543 564 0.97 14 22 6.3 9.3e+02 1.5 2.7 1 23 572 595 572 595 0.96 15 22 0.1 15 7.1 0.2 1 21 646 668 646 669 0.94 16 22 0.003 0.45 11.9 6.9 1 23 677 700 677 700 0.97 17 22 0.03 4.5 8.8 1.8 1 21 726 746 726 747 0.93 18 22 0.0029 0.42 12.0 2.4 1 23 755 778 755 778 0.97 19 22 0.012 1.8 10.0 0.4 1 21 802 822 802 823 0.93 20 22 0.0033 0.49 11.8 2.2 1 23 831 854 831 854 0.96 21 22 0.0086 1.3 10.5 1.5 1 21 890 910 890 911 0.95 22 22 0.00099 0.15 13.4 6.4 1 23 919 942 919 942 0.98
Sequence Information
- Coding Sequence
- ATGCTTACAGACACACCATACAATTGGAGAGAACCTGGTAATAAGCAGTGTCATCGTTGCGGAAAAAGATACAGATTTTTATCGTCTTTAACGAGACACAAAAGATATGGATGTGGTTCAAGAAAACTCGATTATTATCCTTTTTCATACGATAATTGGTCAAgaacagaaagaaaaacacgTTATCATCGTGGACATTATCCATGTCCTCGTTGTGGAAGAAATTATACAGCTGCTAACAACATGTCGAGACACCTTAAGTATGAATGTGGAAAAGAACCAAAATTCAAGTGTCCCTACTGTGGATCAAGATCAAAACAACGTACTAATACATACAGGCACATACGCCTACGACATCCTGGTTTACGTGTTTATTTTGTAGAATGTGAATTTTGTTCACGTTCATTTGCAACAATTGGAATACTTCGACGTCATCAGCGATCCTACTGTTTTGCTAATCCTGTATCACGTTCATTTTTATCGGATAAACATCAATTTCTTTGTAATCAGTGCGGCagttcatttaaaaataaatttcatttggaTGAGCATGTACGTCATGATTGTGGAAAAATACAACAGTGCGATCAATGTGGTGACAGATATGTAAATGAATTACATCGGAGTCTTCATTCTGATACAAGATATCCTTGTCCATCTTGTAACAGTGTTTTTGGACAAAGAAGATCACTAACAACACATTTACGATACGAGTGTTGTCAGCCACCAAGATTCAAGTGTCCTTACTATCCATGGAACTCGGTGTACCTCAAATTCGATGCAACTATTGGAACAACTGGAGATCAAAGAAAATTTGCTTGCCATCAGTGCTCCTGTTCATACAATCGTAGAGACAATCTACTTATGCATCTGCGAAATGAGTGTGGAAGATTACCAAAATTCAAGTGTCCATATTGCTACTATCgttcaaaaaaaacatcgaatgTCAGAGCACACATTCGCAATGTACATGCTGGTTATGCTATTTATGTTATTGATATCGAAATGGATCAGCTGTTTATTACcaacaatgaaattgatttgcCAGATGTGGATCGTATCTATTGGCCTCGTAGACGCTATCGTCGTCCAAGTGTACAATCAACTGATCCAAATGCACCAAGTTATCCATGCACCAATTGTCAGAGTGTTTTCAGCAGACAGCATAATCTACGTTAtcacttgaaatttgaatGTGGTCAAATGCCAAGATTTAATTGTCCTTATTGTGTTTATAGAACACGACATTCATCAAATGTACGTGCACATGTACGAAAAATTCATCCTGGTCAACAAGTTTATGTTGTTGATATTATGCAAAAAAaaCTATTTAGCAATTATCTACCAAGCCAACAAGAACAAACCGGAGATTATCTACTAAGATCATCTAAGAATGGACCATGTGAACGTGAACTTGTtccatcaaataaaaaatttgtttgtCCAAATTTATGCGGCAGTTCATTTAGTCATAGTTACAGTTTAACTAGACATTTGAAATATGAATGTGGACAAGAGCCAAGATTCAAGTGTCCTTATTGTGAATCACTCTACAAAAGAACATCAAATGTAACACAACATATTAGAACACGTCACAATGGTGTTTATGGAAAGATGAACTATGATTATACGTGTCCATCATGCTTACGTTCATTCAAGCACAAAACAAGTTTAAACAGACATATACGTTATACCTGTGGCAAGAGGCCACAATTCAAATGTGCTTTCTGTTGGTATCAATCAAAATGCGCTAGTGATATATACAGACACACTAGAACAGCGCACAAAGGACGTCAGGTTTATGCTATAAATGTTATCAATGAATCTAGTAACTGGGAGACTGATCCACTAGATATAACGCAGACAACTCAAATAAGACTACCACGTCGACGTAGACTACAAAAACGTCAAGCTCTAACTATAAgcaactatatatatacatgtccAAATCCTGGATGTACACGTACATTTTACTGGAGAGGAAGTCTTTCAACGCATCTTAAAAATGCCTGCGGTCAAGAGCCACGTTTCAAGTGTCCCTATTGTAGTTACTGTTGTAAAGTTAAGAGCGAcataaaaaaacacatttctcGTCGTCACAGAGGAAATGATGTTTATGTTGTTGATCTTGTTAAGAGAGAATACAGAAAGCGAACGAAACTTTACGAATCAAGATTCTTCTGCGACAGTTGTTTAAGTTCCTTCCCATCGAGGCACAATTTAACACGTCACGTTAAATACGGTTGTTCAAAGGAATTAAGATACAAGTGTTCTTACTGCGATATGAAATCACAAGACAAATACAATGTGTATAGGCACGTTAGAAATCAACACATTGGAATGGTTGTTAGTTTAACTGATATGTACAtaTTTGTCAGAGGCGATACTATGTACGAAGAGATATTCTTTTGTGCCAATTGTCCAAGCTCATTTCCTTCAAGAACAAGTTTATCTCGTCACGTTAAATACGGTTGTAGGAGAGACTGGAGATACAAATGTACATACTGTGATATGAGATCAAAATATAAATACACTGTTTGGAGGCATGTAGAGAGACAGCATGTTGGTGCAGTTGTTAGTTTAACTGATGTTTATTGTTCATTCGAAGGAGCATTGAGAAGTTGGTCTAACGTATATCATAACCAGTGTAATCCATCAACGGGAAAATTCCACTGTCCAAAGTGCAACAGTGCTTATACTCGTCGTGATACAATGATACAACATTATCGTTATGAGTGTGGTAAAGCACCACGTTTCAAGTGTCCATACTGTCATAAATGCAGCAAGAagacttcaaatatttatcaGCACATAAGATCAGTTCATCCACGTCAACACGTTACTCTTGTCAAACTCTACTGA
- Protein Sequence
- MLTDTPYNWREPGNKQCHRCGKRYRFLSSLTRHKRYGCGSRKLDYYPFSYDNWSRTERKTRYHRGHYPCPRCGRNYTAANNMSRHLKYECGKEPKFKCPYCGSRSKQRTNTYRHIRLRHPGLRVYFVECEFCSRSFATIGILRRHQRSYCFANPVSRSFLSDKHQFLCNQCGSSFKNKFHLDEHVRHDCGKIQQCDQCGDRYVNELHRSLHSDTRYPCPSCNSVFGQRRSLTTHLRYECCQPPRFKCPYYPWNSVYLKFDATIGTTGDQRKFACHQCSCSYNRRDNLLMHLRNECGRLPKFKCPYCYYRSKKTSNVRAHIRNVHAGYAIYVIDIEMDQLFITNNEIDLPDVDRIYWPRRRYRRPSVQSTDPNAPSYPCTNCQSVFSRQHNLRYHLKFECGQMPRFNCPYCVYRTRHSSNVRAHVRKIHPGQQVYVVDIMQKKLFSNYLPSQQEQTGDYLLRSSKNGPCERELVPSNKKFVCPNLCGSSFSHSYSLTRHLKYECGQEPRFKCPYCESLYKRTSNVTQHIRTRHNGVYGKMNYDYTCPSCLRSFKHKTSLNRHIRYTCGKRPQFKCAFCWYQSKCASDIYRHTRTAHKGRQVYAINVINESSNWETDPLDITQTTQIRLPRRRRLQKRQALTISNYIYTCPNPGCTRTFYWRGSLSTHLKNACGQEPRFKCPYCSYCCKVKSDIKKHISRRHRGNDVYVVDLVKREYRKRTKLYESRFFCDSCLSSFPSRHNLTRHVKYGCSKELRYKCSYCDMKSQDKYNVYRHVRNQHIGMVVSLTDMYIFVRGDTMYEEIFFCANCPSSFPSRTSLSRHVKYGCRRDWRYKCTYCDMRSKYKYTVWRHVERQHVGAVVSLTDVYCSFEGALRSWSNVYHNQCNPSTGKFHCPKCNSAYTRRDTMIQHYRYECGKAPRFKCPYCHKCSKKTSNIYQHIRSVHPRQHVTLVKLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -