Basic Information

Insect: Aleiodes leptofemur
Gene Symbol: Snai1
Assembly: GCA_963942555.1
Location: OZ012613.1:2361649-2365891[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00041 0.061 14.6 0.1 1 23 258 280 258 280 0.95

2 12 9.3e-05 0.014 16.7 3.2 1 23 288 310 288 310 0.99

3 12 6.4e-05 0.0095 17.2 0.2 2 23 318 339 317 339 0.96

4 12 2.3e-06 0.00035 21.7 0.9 1 23 345 367 345 367 0.98

5 12 2.2e-05 0.0032 18.6 2.2 1 23 374 396 374 396 0.98

6 12 4.1e-06 0.00061 20.9 0.6 1 23 402 424 402 424 0.96

7 12 1.1e-05 0.0017 19.5 0.2 1 23 430 452 430 452 0.98

8 12 5.8e-07 8.7e-05 23.6 1.2 1 23 458 481 458 481 0.96

9 12 3.1e-06 0.00046 21.3 0.5 1 23 487 510 487 510 0.96

10 12 4.5e-06 0.00066 20.8 2.7 1 23 516 538 516 538 0.99

11 12 7.5e-05 0.011 16.9 0.4 1 23 544 566 544 566 0.94

12 12 0.00024 0.035 15.4 0.1 1 23 572 596 572 596 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00041	0.061	14.6	0.1	1	23	258	280	258	280	0.95
2	12	9.3e-05	0.014	16.7	3.2	1	23	288	310	288	310	0.99
3	12	6.4e-05	0.0095	17.2	0.2	2	23	318	339	317	339	0.96
4	12	2.3e-06	0.00035	21.7	0.9	1	23	345	367	345	367	0.98
5	12	2.2e-05	0.0032	18.6	2.2	1	23	374	396	374	396	0.98
6	12	4.1e-06	0.00061	20.9	0.6	1	23	402	424	402	424	0.96
7	12	1.1e-05	0.0017	19.5	0.2	1	23	430	452	430	452	0.98
8	12	5.8e-07	8.7e-05	23.6	1.2	1	23	458	481	458	481	0.96
9	12	3.1e-06	0.00046	21.3	0.5	1	23	487	510	487	510	0.96
10	12	4.5e-06	0.00066	20.8	2.7	1	23	516	538	516	538	0.99
11	12	7.5e-05	0.011	16.9	0.4	1	23	544	566	544	566	0.94
12	12	0.00024	0.035	15.4	0.1	1	23	572	596	572	596	0.94

Sequence Information

Coding Sequence: ATGACGAGCGATATGGAAAAAGACACGACTCACTGTCTCATATGCAATGGAAAAGTCGGTGTTTCAACGAGAAATTGTGTACgaatattcaatgataataGTAATACAAGTGATAAACCACTTGCTGAAATAATTTGCTCTGTACTGGAAAGAAAAGTGACTGAAGAAAATGTTCATTCACTtgttttatgcaaaaaatgttACAAATTGTGTAACGagtttgagGAGTTGGAGGCGAGAATGTTGGAGGTGAAGCAGGAATTATCTACGAATTATCAAAAGACAATTAAGAAggtgagtgaaaaaattgaggatgaGTGCAACGATCACGATTATCTGGAGAATTTCGAGCACCATGTGCTTGAACCAGAGGAAGTGACTGATGTTGATGAGAGCAAGAaggaggaaaagaaagaggaattgcTGGAGGCTAAGGATGAAGTGAATGAGTGCATTGAGGAACATCTGGAGGAACAGTATCTGCAGGAAGAACTCAATGATGAAGAGGAGCAGGGTGatgaagatgagaaaattcaggaagatcCACTTTCCATGAAATCGGATACTTCGAAAAGTATCAAATCtgatgataaaaagaaaaaagatgggAGGAGAGTGAAAGTACCGATGAAAGAGGAGCCAGCAGAGCCAattgttTCGCGAAATGAAGACACATACACTTGTTTATTGTGTCCAAAAGACAAAGAAGAAGTTACTGGTGATGCTAAAGAAATAATGACCCACATGAGATCAATCCACGAAGCCCGATTGTATATATGTGACATTTGTGGTCTAGATTTCAGaaagagaaatgaattatCAGTACATCTTGATGATCACGTTGCCAAAGAAGAGGGTGACTTTCAGTGTGAAGTGTGCAACAGGATATTCTGTAATTTAAGACTATTTAGAATTCATAGGAGAATACATTATCCACAAGTTAAATCATGGCCATGTGATACGTGTGGTAAACGTTACAgttctaaaaatttattagACGAACATGTTAATACTCATATTGGTGTTAGGCCGTATATTTGTGAGACTTGTGGAAAGGATTTTGCATCAAAATACACGTTTAAGGCACATGTTAAAACACATGAGATTCGTCCAAGGCCATTTGAATGTAATCAGTGTAACAAGACATTCTTGAGCCAACAAAATCTCAATCAGCATGAGAGAACTCATCTCGGGGTTAAGGAATACGTTTGTCATCAATGTGgAAAAGCCTTCGGTTCACCTCACAATCTCGAAGTTCACAACATCGTTCATACTGGGTATAAACCTTACATTTGCAGAATGTGTGGTAAGGCCTTTGCACGAAAAGCAGAAATACGGGATCATGAGCGGACACATACCGGTGAAAAACCCTATCAATGTGAATTTTGTGGTGCTACTTTCAGtCAACGCTCGAACCTGCAGTCGCATAAACGTGCAACACACTACAACGACAAGAGATACAAGTGCGATGATTGCGGTAAAGGATTCAAGAGACGTAGGCTATTGGATTATCACATAAAAGCAGCACACACTGGTGAAAGACCCTACAAGTGTGAAACATGTTCTGCAACATTTGTCTATCCTGAACATTTCAAAAAGCATATGAGAATTCATACCGGTGAAAAACCATATTTGTGTGAGgtTTGCGGAAAAGCCTTCAACAGCAGAGATAACAGAAATGCCCACAGGTTCATTCACAGTGACAAGAAGCCATACGAGTGTCTCGTTTGTGGTATGGGATTCATGAGAAAACCCCTTCTCTATGCACACATGCAAACTCAGGGACACTTGAATGACACTATCGTTGTTAATCAGCCAAGATTGACGACTGAGGACGATCAAGTTATCACACTGAGAGAGGGTGAAGTTGAGTTATTAATGGAAGATGGTGATGGTGATCAATTGACTGAAACCGAGTTGTACGTCACTGAACTGAAGGATCATGTGATAATTCAAGAGAATGATGGGAATATTTATCAGAGTGAAAATGTTCTGGATATGGCACCGGAGGAGAGTATGGGGGAGGGAGAAGACGATCACATGGATAGTGagATAACATTTTCCGATGGCCAAATGATTCAGTGTAAAACAAGTGAAGAAGGTGGAGAACAAGTGTACAGTTACAATGACAGTGAAGAGGGTGAAACAATTGTTGTATCTGGCAATGAGTACAAAGAATTAATAGGTGATGGTAAAAATCCAGTTAGATTGGTTCAAATTAGAATTCCATCATCATCAGGAGTTGATGGAAAAAGTTGGCTCAGTTTGGTACAGCAGCACAcgtaa
Protein Sequence: MTSDMEKDTTHCLICNGKVGVSTRNCVRIFNDNSNTSDKPLAEIICSVLERKVTEENVHSLVLCKKCYKLCNEFEELEARMLEVKQELSTNYQKTIKKVSEKIEDECNDHDYLENFEHHVLEPEEVTDVDESKKEEKKEELLEAKDEVNECIEEHLEEQYLQEELNDEEEQGDEDEKIQEDPLSMKSDTSKSIKSDDKKKKDGRRVKVPMKEEPAEPIVSRNEDTYTCLLCPKDKEEVTGDAKEIMTHMRSIHEARLYICDICGLDFRKRNELSVHLDDHVAKEEGDFQCEVCNRIFCNLRLFRIHRRIHYPQVKSWPCDTCGKRYSSKNLLDEHVNTHIGVRPYICETCGKDFASKYTFKAHVKTHEIRPRPFECNQCNKTFLSQQNLNQHERTHLGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCSATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITLREGEVELLMEDGDGDQLTETELYVTELKDHVIIQENDGNIYQSENVLDMAPEESMGEGEDDHMDSEITFSDGQMIQCKTSEEGGEQVYSYNDSEEGETIVVSGNEYKELIGDGKNPVRLVQIRIPSSSGVDGKSWLSLVQQHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00046418;
90% Identity: iTF_00046418;
80% Identity: -