Alep021174.1
Basic Information
- Insect
- Aleiodes leptofemur
- Gene Symbol
- -
- Assembly
- GCA_963942555.1
- Location
- OZ012618.1:16182658-16185324[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00017 0.026 15.8 0.2 3 23 71 92 69 92 0.91 2 17 3.7e-05 0.0055 17.9 2.7 1 23 96 118 96 118 0.99 3 17 0.0003 0.044 15.1 3.1 1 23 124 147 124 147 0.96 4 17 4.5e-07 6.7e-05 23.9 0.4 1 23 154 177 154 177 0.98 5 17 0.0085 1.3 10.5 3.2 3 23 211 231 210 231 0.97 6 17 0.00078 0.12 13.8 0.3 2 23 238 260 237 260 0.94 7 17 0.00056 0.083 14.2 0.5 2 23 265 286 264 286 0.96 8 17 5.7e-07 8.4e-05 23.6 1.6 1 23 292 314 292 314 0.98 9 17 0.0019 0.28 12.6 1.6 2 23 389 410 388 410 0.96 10 17 1.2e-06 0.00017 22.7 2.4 1 23 416 438 416 438 0.98 11 17 0.072 11 7.6 1.3 1 23 445 468 445 468 0.94 12 17 1.1e-05 0.0016 19.6 2.0 1 23 474 496 474 496 0.97 13 17 0.48 72 5.0 2.0 2 17 502 517 501 524 0.83 14 17 9.1e-05 0.014 16.7 3.6 1 23 531 553 531 553 0.94 15 17 2.1e-06 0.00032 21.8 3.8 1 23 557 579 557 579 0.99 16 17 0.017 2.5 9.6 3.0 1 23 586 608 586 608 0.97 17 17 6.7e-06 0.001 20.3 0.7 1 23 614 636 614 636 0.98
Sequence Information
- Coding Sequence
- atgtATCCACTTGACttACCAGAAATAGTGGACACAATAATACAATCATCACCAGCCGAGTATCGTGTTGTGGTGGTTTGCAAGCGTTCTGGTGAAAAAACAACATCTCTGATACTTGGTGACAAGGAAATTGCGCGTAATATACCAGTTATGCTACCAGCTCAAGATCCATTATGTACAAGTACATCATTACTAACTGGAACAATTGATTGTCCAATTTGTCATCGTAAATTTGCTGATCAATCAGCTGTAGAGAGACACTCGGCATCAGCTCACAAGAGTTCATTCAAATGTAAATACTGCGAGACATCATTTTTCACACAGACTGGTCTTGATCAGCACATGACAACTCATCAGCATCCATTGATATTTAATTGTACGcagtgcaaaaaaaagtataagaGACGAGATGGATTACACATGCATATAATTCGGGCACACAgtaaaattgagggaaaatttaCGTGTGATGATTGTGGTAAaccatttcaattgaaatccgATTTAACATCACACATGAATCGTGCACACATGCTTCAAGAGTGTAGATTTTGTCACAAAATTGTTAAAGACTTGAAGATTCACGAGGATGaacataaaaagaaaaatgctgacataatcgatgaaaattgtgaattatGTGGACAACATTTTAGATCAAAAGCTAAATACGatgtacacaaaaaaaaacacaaagaCGGAAGAAATTTAGAGTGTAAAGAGTGTGGTTTAGTTTTTCCCGGTCATcgttcattaattaatcacaGAGACAGGGAGCACAGATCTGGTACAACTtgtgaaatttgtaaaaaagtgttttattcaataacaaaTTACTATCAGCATGTTCTTGTACATGCTGGTATCAAGCCATATAAGTGTGATGTTTGTGGTGAAAATTTCAGTCAAAGAACAAGCTTGAAAAGACACAGGGAGAGACACGAGGGACCACTACCACCATTCGATGAAGTTACGAGAATAGCACATCTTGCTAAAGAATGCCAGAAAAATCAGTTGAAccaaaaaacaatgaaaaagcCAATTGTTGGATCCAAGCGAAAGCCACTGACATCATCAACTGTTCCATTATCCCCAAGAcaccagaaaaaatctatgaaatcaaGTAAAAAGTATGAAACAGAAACAACAAATTTCAAGTCTCTCATCTGTGAAATATGTTCAGCTACTTGCGATCGTAGAAGCAAACTCGTGAATCACATGTTCAAGCACAGTGAATCACGACCCCacaagtgcacactctgttcAAAAGCCTTCAAGACCCCAAACTATCTTCAAAGACACATGGAGATTCATGAGGAACCAGAGGAATTATTTTCCTGTAATTTGTGTGATTTTCAAGCAAAATCCAAGCCTTACTTGAAGATTCACTTTATCAGAAAGCATACAGAGGAGTGGAGCTTTACCTGTGAACATTGTGGAAAAATGTTCAAGATCCAGGGTGACTACACAACTCATATCAAGGATCACAATGCTGATTCCTGTATATGTGATATATGTGGTGGCTCTTATCCAAGCAAGAGTTCTCTCTACTTCCACAAATACTACAAACACAGgaagaaaatcaaagaattcgaGTGTAATATTTGCAAGAAgcattttaaaaatcagaaaaatctcgACACACACTCGGAGCTACACAAGACGACCTATGTATGTGAGCACTGTGGATTGAGATTTAAATTCAAGTATGGATTGACTAAACACCTCAAGACTCATTCGAGTCATGAAAAATCTTATCACTGTGGAGTTTGTGGAAAAGGCTTCACTTGTTTGAGCTcacagaaaattcatttgttgaCACACGTAGGTGAAAGGCCCTATATTTGTGATGTTTGTGGCCAGAGTTTTACCCAGCGATCACCAATGATGTCACACAGGAGAAAACATCCTGGACCGCATTTACCATTGCCCCCAATTAGAATTTCTGGATTACTTGGTGATATGACAAAGAAAattgtcaagaaaaaaaacgattga
- Protein Sequence
- MYPLDLPEIVDTIIQSSPAEYRVVVVCKRSGEKTTSLILGDKEIARNIPVMLPAQDPLCTSTSLLTGTIDCPICHRKFADQSAVERHSASAHKSSFKCKYCETSFFTQTGLDQHMTTHQHPLIFNCTQCKKKYKRRDGLHMHIIRAHSKIEGKFTCDDCGKPFQLKSDLTSHMNRAHMLQECRFCHKIVKDLKIHEDEHKKKNADIIDENCELCGQHFRSKAKYDVHKKKHKDGRNLECKECGLVFPGHRSLINHRDREHRSGTTCEICKKVFYSITNYYQHVLVHAGIKPYKCDVCGENFSQRTSLKRHRERHEGPLPPFDEVTRIAHLAKECQKNQLNQKTMKKPIVGSKRKPLTSSTVPLSPRHQKKSMKSSKKYETETTNFKSLICEICSATCDRRSKLVNHMFKHSESRPHKCTLCSKAFKTPNYLQRHMEIHEEPEELFSCNLCDFQAKSKPYLKIHFIRKHTEEWSFTCEHCGKMFKIQGDYTTHIKDHNADSCICDICGGSYPSKSSLYFHKYYKHRKKIKEFECNICKKHFKNQKNLDTHSELHKTTYVCEHCGLRFKFKYGLTKHLKTHSSHEKSYHCGVCGKGFTCLSSQKIHLLTHVGERPYICDVCGQSFTQRSPMMSHRRKHPGPHLPLPPIRISGLLGDMTKKIVKKKND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -