Aalt016817.1
Basic Information
- Insect
- Aleiodes alternator
- Gene Symbol
- -
- Assembly
- GCA_963921955.1
- Location
- OY998108.1:5140493-5143318[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.071 9.1 7.6 0.1 3 23 105 126 103 126 0.95 2 13 0.00023 0.029 15.4 0.4 2 22 131 151 130 153 0.89 3 13 0.086 11 7.3 0.5 2 23 237 259 236 259 0.92 4 13 0.00046 0.059 14.5 2.0 2 23 296 318 295 318 0.97 5 13 0.00058 0.074 14.2 0.6 2 23 332 353 331 353 0.97 6 13 6.9e-06 0.00088 20.2 0.4 1 23 361 384 361 384 0.93 7 13 3.5e-05 0.0045 18.0 6.2 1 23 390 412 390 412 0.99 8 13 0.0033 0.42 11.8 2.2 2 23 416 438 415 438 0.96 9 13 3e-05 0.0038 18.2 0.6 1 23 448 470 448 470 0.97 10 13 0.00076 0.097 13.8 1.2 1 23 476 498 476 498 0.95 11 13 1.1e-06 0.00014 22.7 1.5 1 23 503 525 503 525 0.98 12 13 2.5e-06 0.00032 21.6 0.8 1 23 533 555 533 555 0.99 13 13 1.5 1.9e+02 3.5 9.4 1 23 561 583 561 583 0.98
Sequence Information
- Coding Sequence
- ATGGATCCAATTAGCTGTGAGCAAGTGTGCAGGCTGTGTGCAGCACATGGAAGTAATTATACATCAATTTTTGACGCCAATTCAGATGCCATTGACGAGAAAATAAACCAATGTTTACCTATAACAGTTAGTAAAAACGATGAATTACCATCGCACATATGCCCAGAGTGTTTGAGTGCACTAAGTATCAGTGACAAACTTcgtaaaaaatcattggaatcaGACAAATTGCTGCGACAACAATTGCATTTATctgaaatcaaaattaaaacagaaaaatatcacaatGAAGATAATAACGAGCCAATGTTTTGTGGTATTTGTGAAATTACGTTTGATAATGTCCCAGAATTTGATGAACATATGGAGAAATCACATTTATCAAAATGGACATGCAATTTgtgtgatgaaaattttaaaacatCCGACGATTTACTTCAGCACAAATATGCAAATCATTATGATAACATGGAAAATTGCAATGAAGTGGATGACAACATCGACAATTTGGCGGTAGATGATAATACATCAATTGAGGatgataaatcaattgataTAAAGGAGGAAGAGCCTCTAACAACATCAGATAATTCATTCACAGCAAATTCATCATCTCAAACAACTGTTGTTTGTGATATATGTAATGTTAAATGTCATAATATAACAGAAATGCCTTATCACCGAAAATTTCATGCACCACGAGCTATGACATGTTGGCTATGTGACGTTAAATGTCCATCAGCTTATGATCTATTTTTACACAAACAGGATGttcatggaaattttaaaGGGGTAAACATGAAATTCTGctgtgaaaattgtgagagaTTCAGTTCATGCTTGAAAGTATTTAGAAGACacattaattgtaaaaatgttaaattaaaATGTCAGTATTGCTCAAGAGAATTTggcaagaaaattgaattcgtGAGGCATCAAAGAAAAAATCATGGAGAGGAAATGATGAAAGATagtaattgtaaaaaatggcAATGTTCAGTTTGTGACAAACTTTTTGTCAATAGATCCTACTACACATTTCATATTCGCaTACACAAAgtcaaagacgaaaaaaagtataaatgCGATCTTTGCGATAAATTTTTCGCGAGTTCTGCGCATTTGGCAGCCCATCGTGAAGGTGTCCATGAGAAACAACCGAAATATGAATGTGAAACATGCTTCAAGAGATTCTGTACTCGTCGTAACCTAATAACACACCAGAAGCGCCATTCAGACCAGACATGTCGGCAGTGTTCGAAGGAATTCGCAGACTTTCGTTCATTTACTAcccatttgaaaaaagtacACGACATAAGGATCCCTGttgatggaaaatttgctTGTAAACAGTGCCCAAAGAGATTTCCAAAATTGCGACTCCTTCAGGATCATCAGAATATCCATTCCCGGAAGGAACCATACCGCTGTGAGACTTGCGACAAAAGATTTAGAACGTATGCAGCGAAATGGTCGCACGAGCAGAACCATAAAAGAGAGGCCTACGTTTGTGATTATTGCCAGAACTCGTTCAAGAGTAAGCAGAATCTGGTTAGACACATGCAACTCCACTTGCCACCAGAATTATGGAGATACGAATGTAAAATTTGTCAAGCTAAATTCAAACGTACTGCAAGTCTGCAGGATCACATAAGATCACATACACAGAATCATGTTCATAAATGTGACATTTGCGGAGCTCAATATCTTCATAAACATCATATGTTAAGACATAAAAAGCGCCATTCTGAAAGTGCATGA
- Protein Sequence
- MDPISCEQVCRLCAAHGSNYTSIFDANSDAIDEKINQCLPITVSKNDELPSHICPECLSALSISDKLRKKSLESDKLLRQQLHLSEIKIKTEKYHNEDNNEPMFCGICEITFDNVPEFDEHMEKSHLSKWTCNLCDENFKTSDDLLQHKYANHYDNMENCNEVDDNIDNLAVDDNTSIEDDKSIDIKEEEPLTTSDNSFTANSSSQTTVVCDICNVKCHNITEMPYHRKFHAPRAMTCWLCDVKCPSAYDLFLHKQDVHGNFKGVNMKFCCENCERFSSCLKVFRRHINCKNVKLKCQYCSREFGKKIEFVRHQRKNHGEEMMKDSNCKKWQCSVCDKLFVNRSYYTFHIRIHKVKDEKKYKCDLCDKFFASSAHLAAHREGVHEKQPKYECETCFKRFCTRRNLITHQKRHSDQTCRQCSKEFADFRSFTTHLKKVHDIRIPVDGKFACKQCPKRFPKLRLLQDHQNIHSRKEPYRCETCDKRFRTYAAKWSHEQNHKREAYVCDYCQNSFKSKQNLVRHMQLHLPPELWRYECKICQAKFKRTASLQDHIRSHTQNHVHKCDICGAQYLHKHHMLRHKKRHSESA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -