Basic Information

Insect: Aleiodes alternator
Gene Symbol: -
Assembly: GCA_963921955.1
Location: OY998108.1:5156492-5160464[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.028 3.6 8.9 0.2 3 23 113 134 112 134 0.96

2 14 0.00039 0.05 14.7 1.4 2 23 139 161 138 161 0.94

3 14 0.001 0.13 13.4 0.8 3 23 251 272 249 272 0.94

4 14 0.0084 1.1 10.5 0.2 1 20 282 301 282 302 0.94

5 14 0.00028 0.036 15.2 2.7 1 23 308 331 308 331 0.97

6 14 0.0091 1.2 10.4 1.0 2 23 345 366 344 366 0.93

7 14 0.076 9.7 7.5 6.0 1 23 374 397 374 397 0.95

8 14 7.8e-06 0.001 20.1 3.5 1 23 403 425 403 425 0.98

9 14 0.005 0.65 11.2 0.6 2 23 429 451 428 451 0.95

10 14 0.00042 0.054 14.6 5.2 1 23 461 483 461 483 0.98

11 14 0.00027 0.034 15.2 0.7 2 23 490 511 490 511 0.97

12 14 1.1e-05 0.0014 19.6 4.8 1 23 516 538 516 538 0.97

13 14 8.4e-07 0.00011 23.1 0.5 1 23 546 568 546 568 0.99

14 14 5.7e-05 0.0073 17.3 1.0 1 23 574 597 574 597 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.028	3.6	8.9	0.2	3	23	113	134	112	134	0.96
2	14	0.00039	0.05	14.7	1.4	2	23	139	161	138	161	0.94
3	14	0.001	0.13	13.4	0.8	3	23	251	272	249	272	0.94
4	14	0.0084	1.1	10.5	0.2	1	20	282	301	282	302	0.94
5	14	0.00028	0.036	15.2	2.7	1	23	308	331	308	331	0.97
6	14	0.0091	1.2	10.4	1.0	2	23	345	366	344	366	0.93
7	14	0.076	9.7	7.5	6.0	1	23	374	397	374	397	0.95
8	14	7.8e-06	0.001	20.1	3.5	1	23	403	425	403	425	0.98
9	14	0.005	0.65	11.2	0.6	2	23	429	451	428	451	0.95
10	14	0.00042	0.054	14.6	5.2	1	23	461	483	461	483	0.98
11	14	0.00027	0.034	15.2	0.7	2	23	490	511	490	511	0.97
12	14	1.1e-05	0.0014	19.6	4.8	1	23	516	538	516	538	0.97
13	14	8.4e-07	0.00011	23.1	0.5	1	23	546	568	546	568	0.99
14	14	5.7e-05	0.0073	17.3	1.0	1	23	574	597	574	597	0.96

Sequence Information

Coding Sequence: atGGAGGCTGATAAGCCATTGAGAACCTGCAGATTGTGTGCCAATAATGGACCAAATTTTCGGGCTATTTTTAGGGGTAAAGAGAAGAATGAGATAGctgataaaatatcaaaatgttTACCGATATTGgTCACTTCAAACGACGAATTGCCTGGTCACATATGTCCCCTGTGTCTCCGTTCCCTGAACATAAGCTACAAACTCCTGATAAAAGTAATCGAGACTGATGAAAAGCTTCGGCAACAATTATCGGAGTCACGTGGGGACAATAATCAGCAAAATGGTATTCTAAGATCCGAAAATTCCCCTGAAATCGAGAAGAGTGAACCAGGTATATGCGGATTCTGTGAGATACATTTTGTCGATGCTGGTGCATTTGACAGTCACATGGAGACGTTTCATCAGTCAAAATGGGTCTGCAATCTCTGTCAAACTTCTTTTCCAACGTCTGATGATTTATTACAGCATAAACACAAGACGCACTATGATAATGTCGGTAGTTCTGATGGACAAGACTGTAATGATGCTGGAATTATCGACATAAAGGAGGAAAGAATATCAGCTTCTGAGCACTCTGATAACGATAATGTGCCACATGATCCAAAGAAAACGAAGAAGAAACGTGTTActaagaagaaagagaaaattgaggagaaaatcGTCAGTGTCGACTGCAGTATTTGCAATGTTTCAATTGATGAAGCTTTTATGCCTGAGCACAAGCAGATACACGAGCCTTTTGAGCTTTTTTGCACTAGATGCAGAACAAAATTTCCCAGTGCTTATGACCTCATCAAGCACAAACGAGAGGCGCATGATTATTTTACTGAAAGAATCATCAGATATTTCTGCAAAATCTGCAACAGAATGATGACTGATTCAAAGGCACTTAAAGCCCATGAGAATTGCAATAAATTGAGGCATACGTGCAAGTACTGCGATGCCAAATTCAACGTAAAAACACTGCTGAGGCTGCATCTGAACAAGGAGCATCGTGATAAAATGATGGAGGACAAGGATGTCGAGAAACTAGaatgtgaaaaatgtaaaaaattgtttgttgataaaaaatcgTTCTATGATCATGTTTATCTTCATGGAAGACAACTTGTTTTTCGATATCACTGTCAATTTTGTCCGAGACATTTTGGCAGCTGTTCCTCTATGAAGAGTCACGTGGAGAGTATTCATGAACGATCGCTCAAATACAAATGCGTTACTTGTAATAAACGATTTTATAACAAGAAAAATCTGCAgacacatgaaaaaattcatgtgaaattaAACTGTAGAtactgcaatgagaaatttgagACTGTGGATCTAGTGCAGCAGCATCTGCAGAGGCAGCACAATGTGCCGATTAAAGTCAAACGAATGCACACTTGTCCACACTGTAATAAACAATTTTCAAGAAGGAAAATTATGGAGGACCACATGAATACACACAGTGGAGAAACTCCGAGGAGTTGTAATATTTGTGGGAAGCAATTTAGGACTTATGCAGCACGTTGGAATCATCGACAGAGTCATTTGTCAACTGGTTTTTTCTGTGATTACTGTCAAAGAAAAtttgtatatAAGAGGCATTTAAAAGCCCACATACAAACTCACCTGCCACCAGAAGAATGGAAATACGTCTGTGAAATATGCAGTATACGTTATTCCCAAAGTTATCAGCTTGCAAATCACATGAGAAGGCACACTGGTGAAAGGCACTATTTATGTGATATGTGTGGTGCTAAATTCGGTAAAAAAGGACATCTCGATAAGCATTTGAGGACAGTACATTTGAATCAAATGAATCCCATTGCCGCACGTTTGGGGGTTTAA
Protein Sequence: MEADKPLRTCRLCANNGPNFRAIFRGKEKNEIADKISKCLPILVTSNDELPGHICPLCLRSLNISYKLLIKVIETDEKLRQQLSESRGDNNQQNGILRSENSPEIEKSEPGICGFCEIHFVDAGAFDSHMETFHQSKWVCNLCQTSFPTSDDLLQHKHKTHYDNVGSSDGQDCNDAGIIDIKEERISASEHSDNDNVPHDPKKTKKKRVTKKKEKIEEKIVSVDCSICNVSIDEAFMPEHKQIHEPFELFCTRCRTKFPSAYDLIKHKREAHDYFTERIIRYFCKICNRMMTDSKALKAHENCNKLRHTCKYCDAKFNVKTLLRLHLNKEHRDKMMEDKDVEKLECEKCKKLFVDKKSFYDHVYLHGRQLVFRYHCQFCPRHFGSCSSMKSHVESIHERSLKYKCVTCNKRFYNKKNLQTHEKIHVKLNCRYCNEKFETVDLVQQHLQRQHNVPIKVKRMHTCPHCNKQFSRRKIMEDHMNTHSGETPRSCNICGKQFRTYAARWNHRQSHLSTGFFCDYCQRKFVYKRHLKAHIQTHLPPEEWKYVCEICSIRYSQSYQLANHMRRHTGERHYLCDMCGAKFGKKGHLDKHLRTVHLNQMNPIAARLGV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00047460;
90% Identity: iTF_00047460;
80% Identity: -