Aalt022197.1
Basic Information
- Insect
- Aleiodes alternator
- Gene Symbol
- bab1
- Assembly
- GCA_963921955.1
- Location
- OY998112.1:6574379-6578062[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-05 0.035 14.4 0.0 2 38 193 229 192 235 0.85 2 4 5.9e-12 5.7e-09 36.2 0.0 2 38 243 278 242 284 0.87 3 4 0.0048 4.7 7.6 0.0 8 33 301 325 298 330 0.72 4 4 7e-11 6.9e-08 32.7 0.1 4 36 357 390 354 396 0.89
Sequence Information
- Coding Sequence
- ATGTCTGAAGAAACGAATCAACCTCAAATACAACAAAGTTATTGTTTCAAATGGAGTGATTATCAAAATCATTTGTCAACAGTTGTTAAACAATTGTTGGATGAGGATTGTATGGTTGATGTTACACTTTCAGTTGGGGGTGAACGTATTCGTGCACATCGAATGGTACTATGTGCATGCAGTACGTTATTTCAAgaaattCTGAGTGAAACAAAAGAAGATCATCCAACAATAATAATCAGCGACATATCACCGCAAGATGTCAGATCAATTGTGCAATTTTCGTACCAGGGAGAGGTACGAATTCCCGTTGAAAACATATCTAATTTATTGGACGCAGCacaattattgagaataaGTGGATTAATGGAgATCGAGGGACTCGACGAGAACGACACAATCATCAGCAAGGAATTGACTGAGGAAATTGACGAGGAATTAGATGAATCCGGAGATAAAAATGTGCTCGAAACAATCGAAGGAGATGAGGTATGTATTTCAGAAGTGAACGACGACAATTCCAACGAggcgaagaagaaaaagaaaaagagggatCACGTTAAAAGAGATTACAATGATGACATGTTGGAAAGGGCTATAAATGACTTGAAAAATGGTAAAACACTTGTTGAAGCCTCTAGAAAGAATCATATTCCACGTTCCACGCTTTACATGAGAGCGAAGACACTTGGGATACAGTTGAATGCATCGAGGAGTGAATATCCTCCGGAGTGTATGAAAGCTGCTATCAACACTGTGCTCAATGGTTCGAGTCTTCAACATGCTTCTGAAATGTACGGCATACCGAAAACAGTTCTCTGGAGGAGAATGCAGAAAGAGGGATATCAGATTATCAGATCAGAGGCAAAGAGATCATATGGCTCTGAACGAAGAGAGGCTGCTATAAAAGCACTTGCGAGAGGGGAAAATCTTACGACAGTTGCACATGAGTATAATaTACCAAAAACAACGCTATTCAGAGACAAAACAAAGCTCGTTGGTGAGGGTAAATTGCCCGAgtcattttggaaaaaacgaaaaggagatgacgaagaattgaaaaaatcaagactCGAAGAAGCTGTTGCGGCTTGTAAAGATGGAAAAATGTCACAGGCAGCAGCTGCAATAGCTTATCGTATTCCAAAAACTACAATTTGGCGTAAATTACatcaagaaaatggaaaaattgataattctggACACAGTAATAAAAAACAGAAAGtggacaatgaaaaaaatagagaaaaatcggAAAGCGGTGATGCGTTTACTTTGTGTGAAGTTTCATCCGAAATTCCAATCACCTACATCGACGAGAACAGTATTCCCCAAGACTCCGTGATAATTCTAACGACTGAAGACGTCGACGACCTCAATCTAGAGAACGAGCGTCAAATAATCGTCACAACAGACTCGACTCAAGAATATGTTCCCTGTGCTATGAGCATCGACGAGGACTCGAATTATACATCAGCAGAAACATAA
- Protein Sequence
- MSEETNQPQIQQSYCFKWSDYQNHLSTVVKQLLDEDCMVDVTLSVGGERIRAHRMVLCACSTLFQEILSETKEDHPTIIISDISPQDVRSIVQFSYQGEVRIPVENISNLLDAAQLLRISGLMEIEGLDENDTIISKELTEEIDEELDESGDKNVLETIEGDEVCISEVNDDNSNEAKKKKKKRDHVKRDYNDDMLERAINDLKNGKTLVEASRKNHIPRSTLYMRAKTLGIQLNASRSEYPPECMKAAINTVLNGSSLQHASEMYGIPKTVLWRRMQKEGYQIIRSEAKRSYGSERREAAIKALARGENLTTVAHEYNIPKTTLFRDKTKLVGEGKLPESFWKKRKGDDEELKKSRLEEAVAACKDGKMSQAAAAIAYRIPKTTIWRKLHQENGKIDNSGHSNKKQKVDNEKNREKSESGDAFTLCEVSSEIPITYIDENSIPQDSVIILTTEDVDDLNLENERQIIVTTDSTQEYVPCAMSIDEDSNYTSAET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00048077;
- 90% Identity
- iTF_00048077;
- 80% Identity
- iTF_00046319;