Basic Information

Gene Symbol
JARID2
Assembly
GCA_963921955.1
Location
OY998100.1:12448690-12455306[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.9 1e+04 -2.4 0.1 51 82 163 195 158 197 0.62
2 2 6.4e-23 2.3e-19 70.2 0.0 6 89 1395 1476 1391 1476 0.94

Sequence Information

Coding Sequence
ATGGTACTTGGACGCAATgacaaaagaaagagaaaagagggCGACTTGGTGGACCTCATGGATCCAACATCAGGCACTCCAAAGCGAGCAAAAGTTCACGCCCAAAGGAAATTTGCACAAGGTGTGGCAACTGTTTTCAGTCCAGTGCCACCTCTGCTCAAAGAAAAGGAGCGACCACGTTCGACCATGGTCACAGAACTAATAACCCACAAACGTCCAAATACCGAGGATTTCTTGACGTTTCTCTGCTTTCGAGGCACATCGATACTGCCCCCAAGCCTAAACTTCTTCAACCAAGGAAACAAGAAGGAAAAAGGGGATCCAAAAGCAGCTCGTAGCAAATCAAGTGCTGGTCCAGTTGCCTCTTCCACCCAGAGCACTCCACCACCTCCACCAAATCAACCCAAAAGCGAATCTAATACCAATAACAACAATAGTTCAAGTACCCAACCCTCAAAGCCATCAACATCAACTCCAGTATCCACCAACAAGAAGAAATTCCCAAATGTCATCCACAAAACCGTTAACGTCAACAAATTCAAGACAGCAACATCAACAATTCAAGCCTTGAAGAAGAAGTACAAAGAGCAGAGACTAGCAAAACAGagaattgagaataaatttaagACTTCAGTTATGAGAACAAGATCAGCAGCTAGTCGTGCATTATTGAAGCCATCTAACAAGATTCTCCAAcgaattgagaagaaaagcCTTTGTTTACGTAGTAGTGGTGCTGTTGTTGAGAAGAGCAAGATGATGGCATCGAAGAGCAGTAAATTGTTGCCGAAGACGAAGAAGAAGATTGGTTTGAAGAAAAGAGCTGTGGAAAGAAGCGAATCGTCGAGTCGTGGATCACTTTCTGACGAAAATCCATCGGAAAAGGAAGTTCCAAAAAGAGGTGTTAAACTGAAGACAGGACCTCTTAAACAAGCGACAAAAGGGGTTAATGTTAAATCGAAGACTGTATTGGCTGCTGCAAAGAAGAAACCGGAGTTGACGAGACGAGTCACTCGATCACGCTCTGAAACAGCTTCAAATACGGTCCAGACCAATCAGAGACCATCGAGAAAGACTAAAGAAGCTGCAGCTGTTTATATGGAAATTCTCAGTCGTAAATTAGTCAGTCCTGATTTGGAAAATGACGATAATATGTCGTTGGAGAGTTTTCCAGAGGTGCCAAGTACTCGGCGAGACTCTATAGCTACTAGAAATATGGAAAATgacaagaagaagaagctgATTAAGAAGAAAACAGCGGAGAATATTAATGCGAAAGATAAAAATGTTAAGGGAACACTGCAGAAAACTGCACTTAGAGTTAGAAAATCTCCTAAAACTAGTAGAGACTCTGACAGTGATGATAATACGTCAATAGCATCGGAAAAGAGTCATAAAGTTGGTAATATGAAGACAAGAGCAATAACAAGACGAAACAGTAATTTACATCAAGTTCAATCGTTAAATCGTAATTTACGTTCATCCAGAAGTACATgccaaaaaatcgagaaaaataaattaaatactCAAGTTAATGTGATaaataaggagaaaaaaattaatattaaacgtaaaaatgatgatttaatTGCGAAAGAAACTGCTGATAATAGTGTTAAAGAAACTGAGAAAAAGGACAAgagactgagaaaaaaaactaatgataaTGGTGAATCAGATGAAGAGCCACTTGGTAAAGTACTGAATCgtataaaaaaggataaagTATCAAAGCCATTGATATCGGGTAAACGTAcacaaattaataataataaaataaatgaaattaaaaaaaatgaatcaagtgAACCTGTGAtaatgataaagaaaattaataaaattggaattgaTAATGTAGCTAAAGTATCTGATGATGAGGGATCATTTCGTGGATTCAGTAAAAAGTCAATTAAAAGCGTTACTAATTCATCATCAGCTAATGATAATGATTTATCTGGTGTTATTGATTCTAAAGAGACTGATAGTAAATTAGATTTATTAaagaattacgaaaaaaataaattagaatcaaaaaatgaaaatttaaaagtaaTGAGTACTAGTGGAGTCAAGGGTAATAAGGTATCAGCAGTAAATGatagtaaaataataattccacaattttttccaaaaaatttagtgaCAATGGCCTCGAGCACTGCTCTACCCACTACTTCAGTGacgattaatgaaaaaatgcagaataTCATTGGAGTACCATCGACAAAATTGATCAGTCGCAAGGAACGTGTCAATATGTCTGCTGAGGAGATTGAAAAGTGGCTGGACGAAAGTTTGCTTCTTAATGAGGAGAGCAAAGCCGAGATGGAGACGGTAACTAATTTTTCTTATGGCATCGAACCAGAAAAAACTAAATTAGACAATTCCACGTCTTGTCATTTGTCAATACCAACGAGAATTCAGCATTTGGTGAGACCAGTCAATGTAGCAATAGCTAAAATGGCAGATAAGCAGTTCAATACTGTCGAAAATAGCCAAAGCATGGACAACCACATGAAGACTGATATAATAGTCTCAAGTACTGGAATCGCAGTAGCAAAGCCGATTATTCCAACGAATAGAAACAAAATCAACGCTGATATAAAGGAGATAATAAAGGGGAGAACCGGAAAAAATGTCCTGGAATTGGCTACTGAGAAAACTGTTCAAGCAACTGTTGTCCCTGCTGCAATCGACCAGAATGAAATGACGTTGAAGAGTGTTACTGACGACAGTGACACTTCTCCGTCCTCAATCACCGAGAAGATGAGCAAGAAAAAGGCACAACCCCAGCAGCAACGCAAAACTTTTCTGTCTAAAACGAAAGAACGTAAACTCTCAACTCCAAATTCAAATGCATTTTCTCCGGAAAACGAGAGCAGTGTCTATGCTTTTGAGAGTGAGACAGAAACACCAGTTAGTACTCCATTCAGACGTAAAATTCGGGATAATAAGCTTGAAACCcctgagaaaaatgaggaaaaaggggaaaaggGCACAAGTGAAGGTAGTAATGTCAATACTTCTGCTGCCACTAATAGTCTGAAGGAGCAGGATAAGAGTGTTAATTCATCCATCGAGGGACTCAGGAATAAAGGAGCTATGAAGAATCTTCCAAACGCCAAAATCCTAAGATTCGACAATATCCCAGTTGGTTGGAACAATCTCAGCTGCGGAAATTCCATTGCAGTTCAGGTGAACTTTGACGACAGTCAAGAATCCCACGAAATCAATGCGACTCCACGTGAGAACAATGATTCTGGAGGTGACCATGACAAGAATGAcgataaaaattgtgataataaCACTAGTACTGAGATATCGACGCAGACTGACAATGCTAATGACAACGAGGACGATGGTAATACGCAGGTGTTTTATATACCGTTTGAAACAGTTGGAAGGAATATGTCGCATTTATCGGCTCTTCAAGGGCAGTCTCTGATCCAGGGTGTCGCAGTTAAGTTGGGGACTGAAGGAGCGAGTGGACCTAATCAGCGAGTCTTGTTGAGAGCTCAATTAGTGACAAAGCCACCGATCACTGTCACAAGATGTCCGCCAGTTGGAACAGTTCAACCGACTACCAGAACCCCACAAAATACACTAGACCCAAGTTCAGTGCCATCAACTTCTTCATCTGCTGGTTCATCTTCAGCTGCAGCTGTAACTGTAACTGCGACTCAGGCTTCTCTCCAAACGAGAAACAGCGGTTGTGGTACGGATCCCCTCCCCGAAAAGGCGAAGAAACCGGTTAAAACTGTGTCTCGAGCTAAAAAGTTGTCAGCCTCCGACTCACCATCTCCGATAAAAGCAGCGGAAAAGGAGAAAAGGCGACCGGCAAAGAAAGTCAAGAAAACATCGATATCCTCTTCAGAAACTGAACAGTCCTCGATGAACCAAGATGCCCATTCTTCTTTGATGTCCAGTAGCTCGATAACAAACGATAAATCAGAAGCGAGACTTGCTGATGCTCCCACATTTCATCCAAGCGAGAAAGACTTCCAGGATCCTCTAGAATACATTGAGAAGATTCGCCCGATAGCTGAGAAATACGGGATCTGCAAAGTCGTTCCACCATCCAACTTCAAACCAGAATGCAAGGTTTCAGATGACATGAGGTTTACAGCCTACAATCAGTATGTCCATCGGATGCTGCACAGATGGGGACCAAATGTCAAGGAGATGATGGCTATAAAAAAGTATCTAGCCACCCAATCAATAACCCTGTCCCAACCGCCCTGGATAGGTGGGATGGAGGTTGATCTTCCACATCTGTACCAAACTGTTCAGAGCCTAGGAGGCTTGAAGGAGGTCATCGAGAAGAAGAAGTGGCAGAAAGTAGCCGATGGCATGAAGATCCCGAAATCAGCTCAGGATCGTGTTACCAAACTCGACGATATCTATTGCAAGTATCTCCTTCCCTATGACACGCTGTCAACCGGAGAAAGGGAGAAGCTGTTCGAAGATGTGGAAAAGGAGTGGAGAAAGAGGGAAACCAAGGCACTTGAGCGACTAAACGACTCGACGACCTCTTTATCATCTCTCGAGACAAGCAATAACGAAGATGAAGATGACGAGGAGAGTTCCGATGAAACAGAGGAGTGCATTGTCAAAGGCAGAAACATGCCTCTTAACGCATTTTACAGAATAGCCAGAAACACCCAGCGCATGTGGTTCGGCGAGAACCAGAGGAACAATCAAAATGAGATGGAAGGTGCATCTTCAAGTGAAGTTGAAGCAGCCTTCTGGAAGCATGTGTCCGAAAGGAAGCGACATGTCTGCGTTCATGCAGCTAGCATTGACTCCAGTGGCCGAGGTTTTGGCTTTTCCGTTGCTAAAAACAGCCCATTTGCACGTCATCCATGGAATCTCAAGGTTCTTACGAATAATTCGGGGTCTGTGTTACGTGCATTGGGTCCTTTGATGGGTGTGACGATACCAACGATCCATGTTGGCATGTTGTTTAGCGCTTGTTGCTGGTATCGTGATCCTCATGGGCTGCCTTGGATAGAGTATCTTCATACTGGCGCTAAGAAGATCTGGTACGGTATACCTAATGAGTATAACGACAATTTTAGAGAGGCACTTTCGAAAATGGTGCCACGATTCTGCAAAAACAAGACGATTTGGCTACCTTCTGATACGGCTATGGTACCACCGGAAATGCTGGTGAGCAATGGAGTTCCTCTCTGTCGAATTGTTCAGGAACCCGGACAGTTCATCATCGTTTTTCCAAAAGCGTTCACTTCCAGTATTTGTACGGGTTACGTTGTATCAGAGAGCGTTTATTTTGCGCAAACCATGTGGCTGGAACATGCTGAACAGATATTCAAGGATCTTCAGGACAGCTGTGAACCCTCGATGTTCTCGTTTGAACAATTGTTGTTCAGTATCATCAATGACTCGAGATCACATATTGATATATTGAAGCAGATACTACCGGTTATGATGAAGATTCGCGAGAGGGAACTGCATTACAGGCAGCAGTTGGAGTACTATGGCTTGATGAAGATGGAGAAATTACCGCTTCCGGACAGTGGGAAACGGAAGAAGGCTCTTAAAGTCAAGGATGATGATGGAGACTTTGAGTGCGAGACGTGTCGCATGAATTTGTTCGTTTCTTTGGTGAATAATTCACTGGATGATAGTGCTTATTGTTTGCCACATGCTTTACAATTAATTGCACGGAAGAAACAGGTCTTGAAACACTGTACTTTGAAGTATACTTATAATGAGGACGAGCTAGACGATTTAATACACAAACTGGAGGACagaattgaagcaaaatcgaagaaaaaacaatcaaaacaGTCATgctag
Protein Sequence
MVLGRNDKRKRKEGDLVDLMDPTSGTPKRAKVHAQRKFAQGVATVFSPVPPLLKEKERPRSTMVTELITHKRPNTEDFLTFLCFRGTSILPPSLNFFNQGNKKEKGDPKAARSKSSAGPVASSTQSTPPPPPNQPKSESNTNNNNSSSTQPSKPSTSTPVSTNKKKFPNVIHKTVNVNKFKTATSTIQALKKKYKEQRLAKQRIENKFKTSVMRTRSAASRALLKPSNKILQRIEKKSLCLRSSGAVVEKSKMMASKSSKLLPKTKKKIGLKKRAVERSESSSRGSLSDENPSEKEVPKRGVKLKTGPLKQATKGVNVKSKTVLAAAKKKPELTRRVTRSRSETASNTVQTNQRPSRKTKEAAAVYMEILSRKLVSPDLENDDNMSLESFPEVPSTRRDSIATRNMENDKKKKLIKKKTAENINAKDKNVKGTLQKTALRVRKSPKTSRDSDSDDNTSIASEKSHKVGNMKTRAITRRNSNLHQVQSLNRNLRSSRSTCQKIEKNKLNTQVNVINKEKKINIKRKNDDLIAKETADNSVKETEKKDKRLRKKTNDNGESDEEPLGKVLNRIKKDKVSKPLISGKRTQINNNKINEIKKNESSEPVIMIKKINKIGIDNVAKVSDDEGSFRGFSKKSIKSVTNSSSANDNDLSGVIDSKETDSKLDLLKNYEKNKLESKNENLKVMSTSGVKGNKVSAVNDSKIIIPQFFPKNLVTMASSTALPTTSVTINEKMQNIIGVPSTKLISRKERVNMSAEEIEKWLDESLLLNEESKAEMETVTNFSYGIEPEKTKLDNSTSCHLSIPTRIQHLVRPVNVAIAKMADKQFNTVENSQSMDNHMKTDIIVSSTGIAVAKPIIPTNRNKINADIKEIIKGRTGKNVLELATEKTVQATVVPAAIDQNEMTLKSVTDDSDTSPSSITEKMSKKKAQPQQQRKTFLSKTKERKLSTPNSNAFSPENESSVYAFESETETPVSTPFRRKIRDNKLETPEKNEEKGEKGTSEGSNVNTSAATNSLKEQDKSVNSSIEGLRNKGAMKNLPNAKILRFDNIPVGWNNLSCGNSIAVQVNFDDSQESHEINATPRENNDSGGDHDKNDDKNCDNNTSTEISTQTDNANDNEDDGNTQVFYIPFETVGRNMSHLSALQGQSLIQGVAVKLGTEGASGPNQRVLLRAQLVTKPPITVTRCPPVGTVQPTTRTPQNTLDPSSVPSTSSSAGSSSAAAVTVTATQASLQTRNSGCGTDPLPEKAKKPVKTVSRAKKLSASDSPSPIKAAEKEKRRPAKKVKKTSISSSETEQSSMNQDAHSSLMSSSSITNDKSEARLADAPTFHPSEKDFQDPLEYIEKIRPIAEKYGICKVVPPSNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLSQPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSTGEREKLFEDVEKEWRKRETKALERLNDSTTSLSSLETSNNEDEDDEESSDETEECIVKGRNMPLNAFYRIARNTQRMWFGENQRNNQNEMEGASSSEVEAAFWKHVSERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNSGSVLRALGPLMGVTIPTIHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPNEYNDNFREALSKMVPRFCKNKTIWLPSDTAMVPPEMLVSNGVPLCRIVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQTMWLEHAEQIFKDLQDSCEPSMFSFEQLLFSIINDSRSHIDILKQILPVMMKIRERELHYRQQLEYYGLMKMEKLPLPDSGKRKKALKVKDDDGDFECETCRMNLFVSLVNNSLDDSAYCLPHALQLIARKKQVLKHCTLKYTYNEDELDDLIHKLEDRIEAKSKKKQSKQSC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00046743;
90% Identity
iTF_00046743;
80% Identity
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