Agra004258.1
Basic Information
- Insect
- Aldrichina grahami
- Gene Symbol
- stc
- Assembly
- None
- Location
- Contig78:842613-850172[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8 1.2e+04 -4.0 1.6 15 19 621 625 620 625 0.81 2 10 0.053 3.3e+02 0.9 0.2 4 10 654 660 653 661 0.95 3 10 1.5e-05 0.096 12.3 16.7 1 19 666 683 666 683 0.93 4 10 1.9e-07 0.0012 18.3 12.8 3 19 721 737 719 737 0.91 5 10 1.2 7.4e+03 -3.4 0.2 8 11 742 745 741 745 0.83 6 10 2.5e-05 0.16 11.6 19.3 1 19 777 795 777 795 0.98 7 10 1.3e-05 0.084 12.4 14.4 4 18 843 857 836 858 0.86 8 10 0.0062 39 3.9 9.3 1 11 898 908 898 909 0.96 9 10 2 1.3e+04 -4.3 1.1 4 10 913 919 913 919 0.58 10 10 4.3e-10 2.7e-06 26.8 15.5 1 18 925 942 925 943 0.97
Sequence Information
- Coding Sequence
- ATGTCGGCCGACTCAAAGTCACAGTCATCTTCCCAACCACCTTTGTCCCAACTTTGGCCGGGGTTTGGTTCTACATCTAACGAACTGAGTAACCCACTGGAACATCATCAGCATCACCCAACCAATCAAACTCCGGCAACATCTTTGTCTATGAGTTTGCCTAAACATCATCAGCAGCCAACGAATATCAATAATAATTATGTGAATTTTAATCAATTTATAATGCAACATAATTTGAAGTCGCCACATGAAACTAAATCACCCTTGTCATCATCTCTCGATGATAAATTTGCAAAAGTAGAGGGTCAAAATTCCAAATACGATGACGTTTTCAGTTTTATTCAGAATATGGAAGGCATGTATAATAACAACAATATTAATGCTAAAGGCAGCAACAACAATGCCATTAGTGGAAGTAGCAATGTCACCAATAATGGTGGCAGCACCAATACTAATCATCAGCAACAGCAACAAACACAGCAGCTTAAACATCAACAATACAATTACTTCAATCCCACACTACCCCAATATCCATTTGCCAACTATAATAATCAAATTTCCAACAACAACAGTGTATTTTCGGATGGTTTTCAACAATACAATATTAATCCCAATACTGCTCCTGGTATATCAACATCAGCTGCCATCAAAACATCATCAACGGCAAATCCAAATGTTTATGATAATACAAATTCATATGGAAACTTTAATACCAATGGTACCACTTACTATGCCAATCCGTTTGCCACGGGTTTTGATTTTAACAACACCAAACTACAAGCCAGTGCTCCCGAATTTGTGCCAAGATTTGATAAACTTTCGTTGAACGAAACAGCTCAAGAAGCTAAACAACAAACGGAGAACATGGCTAAACATCCCGAAAACACTAACGCCTATAAAGGCAAACCGCAAGAGAAGTATGATGCTAAAGACGAGGGCAACATACCAGGTGAATCTAAAGATATGGCGAAAAATTTGGATTCTAGTTTTGAAAAAGAAGAAAAACGACAACAGCAGAGACATGAACGTTCTCGTGGTAATAATCGTCATCAGAATAAACATGATAAGGAAAATAACAAGAGAAATAACAATCGTTTGGAAAAAAATATGGAAAGATTTTCTAGGAATTTACAAGAGAAGCATCAAAATAATGATTCAGCCTCAAATTCGAATTCTTCCACACCTTCCTTGACCATGAATGGTAGGGAACGGGACCGAGAGCAGCAGCAGCAGCAGCAATCGGGTATTGCTAAATCTACTGGAGCTTTTAGCAAAAATAATCGTGGTTCTTTGAATGGCAACAACGGAGACAAACAAAGAAATTCTGAAGGCCAAGACAAGGCAAGCGGAGATAAAAACAATTACAATAATAAACGTTATCAAAATGGCAGACGTTCCCAAGATTATGCAGAACGTGAAGATCGTTACGAACGTTATGCTGATCGTGGTGAACGTTCCGATCGTGGCCACAATCAGCGTAATCAGCAGCGCAACGACTACCATCAACGTTATGATAACTATCGCAGCAACAAGAGACGTGATGATTGGAATCGTAATCGTGATCGCATCAATGGTTTTCGTGTAGACGAAAAATATTCAAATGATAATGGCAAGGAAAGTCCTTTGGCCTCGCCTGAAAAGAGATCTCCCAAAAAGACTTACGAGAAAGAAAACGAAAAACTTTCGCAAAGAGAAAAACTTATAAGAGATATAGAAAATAGACGTCTGGAATGTTTAGTTTGCGTAGAGCCCATTAAGGCTCATCAAGGTGTTTGGTCTTGTCATAATTGCTATCATATACTCCATTTGCAGTGCATAATAAAATGGGCCTCCTCCTCGAAGTCGGATGATGGCTGGCGTTGCCCTGCTTGTCAGAATGTTGAAAAAGATGTTCCTCGTGATTACTACTGTTTCTGTGGCAAATTGAAAAATCCCACAAATAATCGTCAAGACATTGCTCACTCTTGCGGGGAGGTATGCGGACGTGTAGAGGGCTGTTCACATGCCTGTACTCTACAGTGTCATCCAGGTCCTTGTCCTCCATGTCAGGCTCAGGTTAAACGCGAATGTGGTTGTGGCAAGACCTCCAAAATCATGCAGTGCTGTTTAAAGGAGACCATAGAATGTGATTCAACTTGTGAAAAACTCTTGAACTGTGAATTGCACACTTGCGAGGAGAAATGTCATGAGGGAAAATGTCCCGCCTGCAAGGAGAAGGTAGACCAAACATGTCACTGTTCTAAACAAGAAAGACAGGTTACTTGTACTCGCGATTCCCATGATAAACATAACTATTCATGTGGCAAACCTTGTGGTAAGGATTTAAGCTGTGGCAATCATAAATGTAAAGATTGCTGTCATCCTAATGAGTGCAGACCCTGTAAATTAAGTCCTGATACTGTTACTTCTTGTCCCTGTGGCAAAATGCCCATTGTTACTGAACAGCGCAAATCTTGCTTAGATCCCATACCCGTATGCGAAGGTGTTTGTAGTAAGACTTTAAAATGTGGCAAAGCTACCAATCCCCATCACTGCACATCAAAGTGTCATTTGGGTAACTGCCCACCATGCAACAAACAAACGGCGGTCAAGTGTCGCTGTGGCCATATGGATCAAATGATTAAATGTCGCCAGCTGTCGACACGAGCCGATGATGCTAGATGCAAGAAACGCTGCACGAAAAAACGTTCCTGTGGCAAACACAAGTGTAATCAAGAGTGCTGCATAGACATCGACCACTTTTGCCCACTGCCTTGTAACTATACGCTCTCCTGTGGCAAGCACAAGTGTGATCAACCCTGTCATCGCGGTAATTGTCCGCCCTGCTATCGTTCCTCCTTCGAAGAACTCTTCTGTGAGTGTGGTGCTGAAGTTATCTATCCTCCTGTGCCCTGTGGCACTAAGCGGCCCCGTTTGCAAGCGCCCCTGTTCGCGTAA
- Protein Sequence
- MSADSKSQSSSQPPLSQLWPGFGSTSNELSNPLEHHQHHPTNQTPATSLSMSLPKHHQQPTNINNNYVNFNQFIMQHNLKSPHETKSPLSSSLDDKFAKVEGQNSKYDDVFSFIQNMEGMYNNNNINAKGSNNNAISGSSNVTNNGGSTNTNHQQQQQTQQLKHQQYNYFNPTLPQYPFANYNNQISNNNSVFSDGFQQYNINPNTAPGISTSAAIKTSSTANPNVYDNTNSYGNFNTNGTTYYANPFATGFDFNNTKLQASAPEFVPRFDKLSLNETAQEAKQQTENMAKHPENTNAYKGKPQEKYDAKDEGNIPGESKDMAKNLDSSFEKEEKRQQQRHERSRGNNRHQNKHDKENNKRNNNRLEKNMERFSRNLQEKHQNNDSASNSNSSTPSLTMNGRERDREQQQQQQSGIAKSTGAFSKNNRGSLNGNNGDKQRNSEGQDKASGDKNNYNNKRYQNGRRSQDYAEREDRYERYADRGERSDRGHNQRNQQRNDYHQRYDNYRSNKRRDDWNRNRDRINGFRVDEKYSNDNGKESPLASPEKRSPKKTYEKENEKLSQREKLIRDIENRRLECLVCVEPIKAHQGVWSCHNCYHILHLQCIIKWASSSKSDDGWRCPACQNVEKDVPRDYYCFCGKLKNPTNNRQDIAHSCGEVCGRVEGCSHACTLQCHPGPCPPCQAQVKRECGCGKTSKIMQCCLKETIECDSTCEKLLNCELHTCEEKCHEGKCPACKEKVDQTCHCSKQERQVTCTRDSHDKHNYSCGKPCGKDLSCGNHKCKDCCHPNECRPCKLSPDTVTSCPCGKMPIVTEQRKSCLDPIPVCEGVCSKTLKCGKATNPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHFCPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELFCECGAEVIYPPVPCGTKRPRLQAPLFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -