Agra009606.1
Basic Information
- Insect
- Aldrichina grahami
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig357:52726-59567[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0074 0.3 11.1 0.5 1 23 374 397 374 397 0.93 2 11 4.9 2e+02 2.3 0.3 2 11 404 413 403 419 0.82 3 11 7.1e-06 0.00029 20.6 1.0 2 23 460 481 459 481 0.97 4 11 0.0026 0.11 12.6 0.7 2 23 490 512 490 512 0.91 5 11 7.9e-05 0.0032 17.4 4.9 2 23 519 541 518 541 0.96 6 11 0.0062 0.25 11.4 0.6 1 20 571 590 571 592 0.94 7 11 0.00045 0.018 15.0 5.3 1 23 619 641 619 641 0.98 8 11 0.003 0.12 12.4 1.4 1 23 648 671 648 671 0.97 9 11 5.6e-06 0.00023 21.0 1.7 1 23 677 699 677 699 0.97 10 11 0.12 4.7 7.4 3.9 3 23 706 729 705 729 0.93 11 11 0.0047 0.19 11.8 2.5 2 23 733 754 732 754 0.95
Sequence Information
- Coding Sequence
- ATGGATCAACTGGAACAATTGGAAGCATGTCGTATTTGTGTAACCTGTTTTCCCCTACAAGAAATGGATTTTATAAATATTTTCCAACCAAATGAAGAATTTCAGCCAGAACTTGATTTCATACAAAGCGAAATACGCCAGTGGCAATTGAAAATCCAGCCTGATGATGGGCTGCCACAACGCATCTGTGCAAATTGTTTTGCCAAATTCTGCAGCATTGAGGCGTTTCGTAAGGAATGTGAGGCCTCACAGGAAAAGCTAATTGAGACATTAATGCAACAAACCACAACAACCGATGAGAACGAGCCACAAAATGTTATTAAAAATACAGAGCCACCATTACCTCTAATGGGTAATTTTGAAGCCGGCAGTGTGGTGTTAGATTCCAGAAACAATGTTTTAGTTTCTTCCGTAAATTTAACACAATCGGATGTGTCGCTCAATGATTTTCCCGTCTTCGATCAGCAATTCTCACATTTCGATAATACCGCTCTAATGGATGCCTCCTCCACTTTGCTGGATAGCAATCTTATAGCAGCAGACACCTCCCAAGAATTGGGCTTTTTACCGTCACAAAACCTATTTACATTTGAGACTGCCGAACCACCCTCAGCGGTTACACTGCCATTAGTTGAGACTGATAGTACGTCCATGATGAATGAGATTCTTCCGGAGAAGACAGGCGGCGGTGAGGAAATCATTATTAAACAAGATCTCGAAGATATGCTACAACGCAGTATTATACCAACTACAACCAAATTAACGCAACAACAAAGACCTAGTGTAAGCGGTGAACAACAACCGATTGCTGGCAACCCGGTGACCATAAAGTTGGAACAGGAAATTAAAAAAGAAATTGTACCTCCATATACTAGCAGTAATTATGGAATGAGAGTGAGGAATGACTATCAAAATACCACAATAACATTCTTAAATCGCGAGGACACCAACTCCGACGTTGAATGCGACGACTCTGACATGAATGCCCGTTTAAAGGGCTTATCTTATGCTTGCCATTATTGCTTCTGTCCCGAAACCGGACCCATCGAACATCTTGTCTTCCCCAATGAAGATGCTCTCTCGCAGCATTTCTTCGACATACACGATCCGAATCGCCCCTACACTTGCCCCAAATGTCCACAATCGTACAAGACTCAGTTGTTGCGTGACAATCACGTAAGACTCATACACAAAATCACCGAGATACAAACGTGTAACTATTGCCAGAAACGTTTAAAAGGTTCCACGGATGTGCACCAATACAATTGCCAATATGTTGGCGACTGGGAGTGCCAACACTGCAAGGAGAAATTCCCCAATACACCGCTATACCGTTTTCGCTTGCATCAGCGTCATCATGAACGCATCAAGCATTTAAAGTGCCGTTTGTGTGAACGTACGTTTATGAGAAAAGCCAACTTGGAGGCTCATCAAAGGATGCACAAGGCCGAAGTACAGTGCGCTAACACATGTAACATATGCAAAGCCAGTTTTGTCGATGACTATGAGCTAAAACGTCATAAATATCAACAACATAGTGCTGAGGCCCCTCTCAAGTGTAAATTTTGCCATAAAGGTTTTTCTTCGAATGTTTTTCTACAACGTCACATGAATAAATTTCATGCAGACACAGCAAAAACTCACAATAACATTAATGTCTGCTCATCCACAGCATCGTCATCATCCAACAACTCTCCCACGGAGCTACAGCACACTTGTCTGAATTGTAATGAGGGTTTCAAAACTTTGCAAAAGTTACAAAATCATTTGATTTTGGGACGCGATAAGAACGGCAATTGTTTGTATACCTCGTGCAACAAACAGGAGCGTCGTAAGCTTCAGCGTCAGGGTGTATTTCCTTGTTTCCATTGCCCCAGACGTTTCCACTTAAGGTCTCAACTGGAGAAGCATTTAAATACACACGACGCTCGTTTACGGCCCTTTCAATGCGAACAGTGTGTGACGCGTTGCCGTACCGCTTTTGAGTTGAAACAGCATGTGAATGTGGCCCATTTGAATATCAAGGCATTTTCGTGTGATAAATGTGGTAAAAGTTTTGGTTACAAGAAGGATCTTAGAGATCATATGCTATTTCATGCAGAAATCAATGTGCACTGCACCGAAGATGGTTGTGATTATGCGTGTAAAAATGAAAAGGCTTTAAATGATCACATACGTCACAAACATCGTTTGTTGTCATGTGAATATTGTCACGAACAATTTACCCGGCAAAAATTAACAGCTCATTTACGTAAAATACATCGGGCCGAAATTGATGTGGAATTGGCTGGTGAATCTGATAACTATTATAAATCTCAATTACTTAATAATAACAATGATATTACACAAATCTCGTTTAATTTACTTAATACTCAACAAACACAACAACAACAACAGCAAACACAATTAGCAAAAACTTCACCCCCACTGCCACCCACATCATCAGCATTATCTCAAACATTAAATGCTGCAATAAACAGTAATCAACTGCAAACGCAAACAACTCTAACAAGCTCATCATCATCCCCATCGCCATCACCTACAACTTCATTATTAACAGCATCCATTACAGCAACTTCAACATCTTGTTTAACACCCACCACCAAACTCACAAAAGGTACTACCAACTCTACTTCCCTTCTGATGGTTGATGATGATGTTGATCATCATCATGATCAATTGTGTAACATGTTTGCTACAGCTGCACATGATGCAACAAACTCGAATGCATTAGCTTTAAATGGTTTGGTTTCTAGTGAACATGATTTGAATTTAGTGAACAATGAGGCCGCCAATATGTTTTTAGTGCCCTCGGCATCATCCAACACAAATGACAACCAATTAGATCAGTATTTTATGGCCTCTTTAATTGATACTGAACAAGAAATAATCGTTACATAG
- Protein Sequence
- MDQLEQLEACRICVTCFPLQEMDFINIFQPNEEFQPELDFIQSEIRQWQLKIQPDDGLPQRICANCFAKFCSIEAFRKECEASQEKLIETLMQQTTTTDENEPQNVIKNTEPPLPLMGNFEAGSVVLDSRNNVLVSSVNLTQSDVSLNDFPVFDQQFSHFDNTALMDASSTLLDSNLIAADTSQELGFLPSQNLFTFETAEPPSAVTLPLVETDSTSMMNEILPEKTGGGEEIIIKQDLEDMLQRSIIPTTTKLTQQQRPSVSGEQQPIAGNPVTIKLEQEIKKEIVPPYTSSNYGMRVRNDYQNTTITFLNREDTNSDVECDDSDMNARLKGLSYACHYCFCPETGPIEHLVFPNEDALSQHFFDIHDPNRPYTCPKCPQSYKTQLLRDNHVRLIHKITEIQTCNYCQKRLKGSTDVHQYNCQYVGDWECQHCKEKFPNTPLYRFRLHQRHHERIKHLKCRLCERTFMRKANLEAHQRMHKAEVQCANTCNICKASFVDDYELKRHKYQQHSAEAPLKCKFCHKGFSSNVFLQRHMNKFHADTAKTHNNINVCSSTASSSSNNSPTELQHTCLNCNEGFKTLQKLQNHLILGRDKNGNCLYTSCNKQERRKLQRQGVFPCFHCPRRFHLRSQLEKHLNTHDARLRPFQCEQCVTRCRTAFELKQHVNVAHLNIKAFSCDKCGKSFGYKKDLRDHMLFHAEINVHCTEDGCDYACKNEKALNDHIRHKHRLLSCEYCHEQFTRQKLTAHLRKIHRAEIDVELAGESDNYYKSQLLNNNNDITQISFNLLNTQQTQQQQQQTQLAKTSPPLPPTSSALSQTLNAAINSNQLQTQTTLTSSSSSPSPSPTTSLLTASITATSTSCLTPTTKLTKGTTNSTSLLMVDDDVDHHHDQLCNMFATAAHDATNSNALALNGLVSSEHDLNLVNNEAANMFLVPSASSNTNDNQLDQYFMASLIDTEQEIIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00922452;
- 90% Identity
- iTF_00259363; iTF_00260228;
- 80% Identity
- -