Basic Information

Insect: Aldrichina grahami
Gene Symbol: ush
Assembly: None
Location: Contig43:350283-410083[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.067 2.7 8.1 0.0 6 20 267 281 263 283 0.95

2 8 0.00034 0.014 15.4 0.8 1 23 338 360 338 360 0.98

3 8 0.057 2.3 8.3 1.0 2 21 389 408 389 409 0.92

4 8 0.059 2.4 8.3 2.9 2 21 815 834 814 835 0.93

5 8 0.011 0.45 10.6 0.0 3 21 876 894 874 895 0.91

6 8 0.14 5.8 7.1 0.1 1 23 981 1003 981 1003 0.97

7 8 0.016 0.64 10.1 1.4 1 23 1009 1031 1009 1031 0.99

8 8 0.00039 0.016 15.2 0.6 1 23 1113 1136 1113 1136 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.067	2.7	8.1	0.0	6	20	267	281	263	283	0.95
2	8	0.00034	0.014	15.4	0.8	1	23	338	360	338	360	0.98
3	8	0.057	2.3	8.3	1.0	2	21	389	408	389	409	0.92
4	8	0.059	2.4	8.3	2.9	2	21	815	834	814	835	0.93
5	8	0.011	0.45	10.6	0.0	3	21	876	894	874	895	0.91
6	8	0.14	5.8	7.1	0.1	1	23	981	1003	981	1003	0.97
7	8	0.016	0.64	10.1	1.4	1	23	1009	1031	1009	1031	0.99
8	8	0.00039	0.016	15.2	0.6	1	23	1113	1136	1113	1136	0.96

Sequence Information

Coding Sequence: ATGGATGAGTGTGTATTTTGCGGTGATTGTTCAGATTCTACAGAAGACATGACAGTAGATAGCCGAGATTCCAAAGATTTTAATCCTAACAATACTACAAGCATAATGGACGATCATACCGATGAAGAGAGAAGAACTCCCCAAAACAATCATTATTCCCATACCCATGCCGCACAACAGCAAACTAAAGAGACTGATATAGTAATGACCGAAGAGCATAGCGAAATGGAGCATAACGAAGAAGATGCCGACTCACAACCACCCCAACACAAGAGACCAAAAATGGAAGTGGAGCTGGAATATAGAAGAAATAGTCCTCCTGTACAGTCACCTGTGACAAGAACTACTGAAAATTCGAATGACTCTCTGAAATGTGATGATTTTCAAAATCAAATAGATGAATCTAATTCAAAAGATCGTAGATCTACAAGTCCTTCTTTGAAGGCTGTAACACCCGCTATTAGTCCTTGCAATGCAGAAGTCTCGCATGAAAATCTATGCTCTCCCACTTCGGGATCTATGCCCAAATTAAGGCTTAATGCTTTATTGGCTTCAGATCCTGCTCTAATGCCAGATGCCAAAGATTTAAAGGTCGCACATGAAGAATCCCAGACTCAGCAAAGAATAGCACGTTTAGAACAGCATCTGCAGCAGCAATTACAAACGGAAGAGTCTGAGAGTAACGAAACTGAACATATAACATCGCCTGCTGTTGCTGCATTAGTGGAACCAGTTAAAAAATCTATGCCCGTACCCGTGGAAGCACCACAACGCATGAAAGTGTTTATGTGCATACCCTGCGGTATAGGTTTTAGTTCTCCTTCCACTTTAGAAGCCCATCAGGCGTACTATTGTTCTCATCGACATAAGGAAACGGAAGATGACAGTTCGTTGTCCGCAGCCATAGCTGAAAAAACTTCAGCATCTCCTACACAAGCCAATAATCCTACAGCAAACATTTCACTGGCTCCCACAGAACCAGCAGCAAAAGTTCCCAAGACTGGCAAACAATATGCCTGTACACAGTGTTCCTATAGTGCCGATAAGAAGGTATCGCTTAATCGTCATATGCGCATGCATCAGACATCACCAGCGCCCAGCTCCAATGCTTCCAATAACGGCAGTGCCATAATGGAAGATAATTCTAGTCAACAAGTGGATCGTTATTGCAGCGATTGCGACATACGTTTTAATAACGTCAAAACCTACAGGGCTCATAAGCAACATTATTGCAGTTCCAGGAGAACAGAAGGACAATTAACACCCAAATTGGAAGTTTCTACCACCTCGACTACACCAAAAGTTCCAGCCGTTGTCGGTGGTGCCATAAGTCCACAGACTCGAACTAAAACTCCCACTCCTGCTATGGTAGCAGCGGCAGCCGCCGCAGCAGCAGCTGCCTTACAACAACCCCCTGCTACACCATTCCTGGCTTTACCCACAAATCCCATATTAATCATACCATATTCATTGATACGTTCGGCTAGTCTTATAGCAGGACCTTTATCATCACCCTCGCCGGCTGTGGTAAATCCAGATACAACATGTTTTACGTTGGATAATGGCAATTTGAAACCTTTGGCCACAGCTTTGAATATAAATGCCCTCAATGCTGCATCAACTGCTGCAAATAGTATAGCAGCCGCTACAACGGGTCAACAAATAAATGTTGTAGATTCTACGCGTCAAACAAATGCCACGGAAACTTTACTAACCGAAAAGAATATCAAACGCAATGTGGACGAAGCCGCGGAAAATAGTAACAAGAGAAAAGCAGACGGTTTTAGAGAATCTGCTCCCTTGGATTTATCTCTAAGACGTTCTCCCATAGCTGCTTTATTGCAGAGACAACGTTTCAATTCCGCTTCATCATTTTTAGACAATGAACAACAACGTTTTGATATGGAGACTCTTTTAGAAGCAGGCAAAGAAAATTTGGCCTTGGACGAAACGGGCAGCATAACACCCGAACAAATTGTTTGTGCTCCCTCATTACCGAATAGTCCTTCCATGAGTCCCTCGCCCCGAAGGCGTGCAATAAGTCCAAGAAGTTCTGGAGCGGGCAGTACCTCATCAATGTCCCCGCCAGCCTCTATACCACCAAATGCTTTAAGTGCGGCCTCTAATCCCACAAATATACTAGATAACTTACAATTACGCTCAATGTTGCCAGCTGAACTCTTGAATCCTTTGCTGGCAAAACAAAACATGGAATTGGCTTTAAAACTATCAGCCGCTGCAGCAGCTGCAGTCAGCTCTTCCACTGGGGGAGTACCCACTTCTGGTTCCACATCAGCCGATTTAGCAGCTGCAGTGGCAGCTGCCACTGGCAGAGGATCTCTTTTGGGTTTGCCCGTTTTACCACAGGCTCCGGCTGCCTCAGTACAAGTGCCAACGGCCCCAGCAAATCAACCACAAATCTATGTTAAACAAGGAGTTTCGAAATGTAAAGAATGCAATATTGTTTTCTGCAAATATGAAAACTATTTGGCCCATAAACAGCATTACTGTTCCGCTCGGAATCAAGAACCCACTGAAGGTGAATCTAAAGTTTCGCCAACACCTCCCATGGCTACGGGAGCCTCTACAGCTGAAACAACACCAATGGCTTATCAACAACTAATTTGTGCAGCATGTGGCATTAAATATACCTCCTTGGACAATTTAAGGGCCCATCAAAACTATTATTGTCCCAAAGGTGGTGGTGTAGCAGCCGCAGCGGCTGTTGCCGCCAACTCCGAAACCACTCATGCAGTTTTGAAGAAGGAAAAATGTGTCAAGTGCAAAACTATGCATGAGTTGACATTACCTTGTCCACCACCACCGGCAATACCACAACCTACACCCACACAAACATTAGCCACAGCCAGCCAACAACAACAACATTCTTTAACAACCAGCACCTCTACTTCCTCTGGTTCCAGTAGTAACCAAAATCTTTACAAATGCCCTCTATGTGATGCTGTCAGCTTAACAGCCAGTGAAAGTCGCAAACATATGGAAACCCATGGCACTGTTAAGGCCTTCAGATGCACCATTTGTCGCTATAAAGGCAATACTTTAAGGGGTATGCGCACTCATATACGCATGCATTTCGATAAGAAAACTTCCGATGTAAATGAGGAACATTACATGGCCTGTATATTAGAGGATGAAAACATTGAAATACCAAGTGCTGCCTCGTTAAATCAAGAACATTTGGTTCAACAGTTGGCTGCTGCCCAACAACAGCAGCAACAACAAAAGCAGTTAGTAGCTGCAGCAGCTGTTGTAGCTGCTGGCCTTCAGCAACAACATCAGCAGCAACAACAACAGCAACAATCACAGCAGCAGGTGTTCAATTGTGATATTTGTAATTATTCTTCAACATATAAAGGCAATGTGCTACGTCATATGAAATTGGTGCATCCTCATATTGTCCCCAATTCCCCCTCTATCTCGCCGGAAGTGGGAGATTTAGACACAACCGAGACGGCCTCATTAAACAGCAGCCACAATGGCGACAATAACATGAATAATTTCACTATCAAGTCTGAACCCATGGATCATCATGCCAGCAACACAAGTCCTGCGATCCTATTAAATCCCCATGACAATAACAATTCACCCATACCGAATATACCACATAATACCCCAATGAATTGA
Protein Sequence: MDECVFCGDCSDSTEDMTVDSRDSKDFNPNNTTSIMDDHTDEERRTPQNNHYSHTHAAQQQTKETDIVMTEEHSEMEHNEEDADSQPPQHKRPKMEVELEYRRNSPPVQSPVTRTTENSNDSLKCDDFQNQIDESNSKDRRSTSPSLKAVTPAISPCNAEVSHENLCSPTSGSMPKLRLNALLASDPALMPDAKDLKVAHEESQTQQRIARLEQHLQQQLQTEESESNETEHITSPAVAALVEPVKKSMPVPVEAPQRMKVFMCIPCGIGFSSPSTLEAHQAYYCSHRHKETEDDSSLSAAIAEKTSASPTQANNPTANISLAPTEPAAKVPKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSSNASNNGSAIMEDNSSQQVDRYCSDCDIRFNNVKTYRAHKQHYCSSRRTEGQLTPKLEVSTTSTTPKVPAVVGGAISPQTRTKTPTPAMVAAAAAAAAAALQQPPATPFLALPTNPILIIPYSLIRSASLIAGPLSSPSPAVVNPDTTCFTLDNGNLKPLATALNINALNAASTAANSIAAATTGQQINVVDSTRQTNATETLLTEKNIKRNVDEAAENSNKRKADGFRESAPLDLSLRRSPIAALLQRQRFNSASSFLDNEQQRFDMETLLEAGKENLALDETGSITPEQIVCAPSLPNSPSMSPSPRRRAISPRSSGAGSTSSMSPPASIPPNALSAASNPTNILDNLQLRSMLPAELLNPLLAKQNMELALKLSAAAAAAVSSSTGGVPTSGSTSADLAAAVAAATGRGSLLGLPVLPQAPAASVQVPTAPANQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEPTEGESKVSPTPPMATGASTAETTPMAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGVAAAAAVAANSETTHAVLKKEKCVKCKTMHELTLPCPPPPAIPQPTPTQTLATASQQQQHSLTTSTSTSSGSSSNQNLYKCPLCDAVSLTASESRKHMETHGTVKAFRCTICRYKGNTLRGMRTHIRMHFDKKTSDVNEEHYMACILEDENIEIPSAASLNQEHLVQQLAAAQQQQQQQKQLVAAAAVVAAGLQQQHQQQQQQQQSQQQVFNCDICNYSSTYKGNVLRHMKLVHPHIVPNSPSISPEVGDLDTTETASLNSSHNGDNNMNNFTIKSEPMDHHASNTSPAILLNPHDNNNSPIPNIPHNTPMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260189;
90% Identity: iTF_00200298;
80% Identity: -