Basic Information

Insect: Aldrichina grahami
Gene Symbol: KHDRBS3
Assembly: None
Location: Contig10:2613311-2616978[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.084 3.4 7.8 2.8 2 23 534 556 534 556 0.90

2 9 1 43 4.4 2.5 1 23 563 586 563 586 0.91

3 9 0.0037 0.15 12.1 2.8 1 23 591 613 591 613 0.98

4 9 1.6e-05 0.00067 19.5 3.0 1 23 624 646 624 646 0.94

5 9 0.00027 0.011 15.7 3.7 1 23 651 673 651 673 0.99

6 9 6.7e-05 0.0027 17.6 0.2 1 23 679 701 679 701 0.98

7 9 0.0031 0.13 12.3 0.6 2 23 707 728 706 728 0.96

8 9 0.022 0.88 9.7 2.7 1 23 780 803 780 803 0.94

9 9 0.0035 0.14 12.2 1.3 2 23 810 832 809 832 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.084	3.4	7.8	2.8	2	23	534	556	534	556	0.90
2	9	1	43	4.4	2.5	1	23	563	586	563	586	0.91
3	9	0.0037	0.15	12.1	2.8	1	23	591	613	591	613	0.98
4	9	1.6e-05	0.00067	19.5	3.0	1	23	624	646	624	646	0.94
5	9	0.00027	0.011	15.7	3.7	1	23	651	673	651	673	0.99
6	9	6.7e-05	0.0027	17.6	0.2	1	23	679	701	679	701	0.98
7	9	0.0031	0.13	12.3	0.6	2	23	707	728	706	728	0.96
8	9	0.022	0.88	9.7	2.7	1	23	780	803	780	803	0.94
9	9	0.0035	0.14	12.2	1.3	2	23	810	832	809	832	0.95

Sequence Information

Coding Sequence: ATGTCTTCTGAAGTCCTCAATCCTGAATCACCTAATTATGAGCAAACATGCCAACTAGAAACAAACGTAGTAAACCAAAGTCTCTTGGAAGATTTGCAAAGGGAACAATCCAGCTTGACAGATAATTTTCCGATATGTGCCCTTTTGATTGATGAAGCTTTGGATCGTTTTTTTTCCACCGGACTTGTAACTGGTTGTGAATGTTATGCCGATGTACTCAATCAAGAGCCAATGAAACTTACCCAAAAGGTTTTAGTGCCTGTAAAACAATATCCTGAATTAAATTTGTCTAGTATGTTCGGGAGTTCCTTAGTGCAACTACAAGAGGCAACACAATGTGAGATTCAAATCAAAGGGCGTAATTCTATGATTGACAAGGTTAAGGAAGAAGAACTGCGACAATCGGGGGATCCGCGTTTTAAACATTTGAATAAAGACTTGTTCTTGGAAATAAGCACAGTGTCTACACCGATTGAGTGTTATACACGTATTGCGTATGCCTTGGGAGAAATACGTAAATGTCTAATACCAGATACAAACGATGATCTTTCACATGAAGAATTAAGTGAAATAATTAAAATCGAACCGGAAGTAGTTGGTACCCAACAAATTGTGAAGTGCGAGCAGCTGGAAGATAGCACTATTATGGATGATCTCCCACTTGAAGTACTTTTTAAAGAACCTAAAACACCACCACCCTTATTAGATAAACCCCAGGACAAACCATTTATTTTTGGCTTAGCTGACAAACTAATTAAACTATTGGATGAAACTGTTTTAAATCCCAATTTTCAGTACTCAGAAGAGGAAACTATGATGGTCTCAAACAACATAGATATTTTGAATAGTTTTATTGTATCTAAAGTTCCATCAAATTCAACGCCAACATCTAGTGGTACCAACATGGAAAATAAACTATTAAGTACAACTGCGGCTACGTCCAAAGTTCGTTCTCAAAGTAAAAACGTGGGTGTAACAAAAAAACATACAACAAAGAGAAAAATGACTAGAGATTCAACTAATTTCAACAATATTGAATCTAAAAACGAAAAGACAAGACCAATTAAAAATATTATGATACGGAACGCTTTAATGAAAAGGGAACGGTCTCCGGGATTATTTTATATAAAAGATAAAAAGAATGATAAAATTATAAAGCGCCAAATTTCAAATAGAACTACGTTAAGTCGCTGCCTTAAAAGATCTGATAAGGAAACCATAGATCCAGAAGAAGAAGTTGAATGTAATCCATTACCTATAGACCATCTGCAACAGTCGCCTACCGAGCTTGTTTTTGAATATACACCCCGAGATATAATTCTTTCACTACTAGATACCATGAAAAACTATCCCGTTTTGTGGCAATTTCATGACAAACCATTTAATGACGACTATATTGAAGCCATCGAAGATTTGTGTCAAATAGTTAATGTCAAATGGTCATTGAATATAGATTCATTGAAAATGCGTCGCAGCATTAATCGTGTGTTAAGATTTTACCGTTTTGTATTCCCATTTGAGAATATTGAAAAATTTTCTGAATATTTCGACAAATGTGCTGTATTTCTGCCATCAACTGTGATGGAAATTCCGCATGCACGATGTTCGCACTGTTTTATTTGTTTTAAAGAGGATGTCGAGTTGAGAAGGCATCTTGTAGAAGAACACAAGTCTTTGAAATGGCCTCACAAGTGCCAACACTGCGCTGAAAGTTATGAAGACAATGAGGAATATGAGTTTCACAAACGTCTGCCACATTATGTTGAAATATTTACATGTGAACAATGCAATGAGAAATTAAATCATCGCAGTGAGTACAATCAACATTTAGCTAAACATCAACAAAAACAGATTGAAGAACCCAGAAATCACGTATGTAACGAATGCGGCAAAAAATTTAGAACCAATGGGGAGTTACGAAGTCACAAATACTATCACGAAGAAAAAAAATTTAAATGTCATCTGTGTCCGAAATCTTATTTCAAAAGCCCTACTCTTACAATTCATTTAAAGAAACATCGCAATCAATTAGATTATATATGCGAAGTGTGTGGAAAAGGATTTCTTCAACAAAAATATCTGAATGAGCACATGGATACACACAATGGAATCCAAATATCGTGTAATATTTGTAATTTAAAGCTGAGAAGGGGTAATCTATACCGCCACTTGCGCACTGTTCATGTGGCAGTAGAGGGAACCATCGAAAGTACATTTAGAGCAAAAGGTCACAGGCATAATCAGCTTACACACCCTCAAAGACGAACACATAAGATCAATCCCATTTACCAGCCATCGAAACGTTCAAAACGATCCGAAGAAAAGGTTCCTCGTCAATACGATTGTAAAGTCTGTAATATACATTTTGATCGGCTCAAATTCCTCAAAGATCACAACAGGGAAAATCATGGCAATATAAACAAAGTATCGTGTAAAATGTGTGATTCACAATTGGCACAAAAAACTAATCTAAAGCGTCATTATCGTGAAAAGCACAAGTTGAGTGACTATCAAGCATTCGAATTAGTCGATAAGGACGAGGATATAAATACAGTTTTATCAATGACAAAAGAGGAAATGAATGAACAAAGTGGAAACCAAAGCGACTAA
Protein Sequence: MSSEVLNPESPNYEQTCQLETNVVNQSLLEDLQREQSSLTDNFPICALLIDEALDRFFSTGLVTGCECYADVLNQEPMKLTQKVLVPVKQYPELNLSSMFGSSLVQLQEATQCEIQIKGRNSMIDKVKEEELRQSGDPRFKHLNKDLFLEISTVSTPIECYTRIAYALGEIRKCLIPDTNDDLSHEELSEIIKIEPEVVGTQQIVKCEQLEDSTIMDDLPLEVLFKEPKTPPPLLDKPQDKPFIFGLADKLIKLLDETVLNPNFQYSEEETMMVSNNIDILNSFIVSKVPSNSTPTSSGTNMENKLLSTTAATSKVRSQSKNVGVTKKHTTKRKMTRDSTNFNNIESKNEKTRPIKNIMIRNALMKRERSPGLFYIKDKKNDKIIKRQISNRTTLSRCLKRSDKETIDPEEEVECNPLPIDHLQQSPTELVFEYTPRDIILSLLDTMKNYPVLWQFHDKPFNDDYIEAIEDLCQIVNVKWSLNIDSLKMRRSINRVLRFYRFVFPFENIEKFSEYFDKCAVFLPSTVMEIPHARCSHCFICFKEDVELRRHLVEEHKSLKWPHKCQHCAESYEDNEEYEFHKRLPHYVEIFTCEQCNEKLNHRSEYNQHLAKHQQKQIEEPRNHVCNECGKKFRTNGELRSHKYYHEEKKFKCHLCPKSYFKSPTLTIHLKKHRNQLDYICEVCGKGFLQQKYLNEHMDTHNGIQISCNICNLKLRRGNLYRHLRTVHVAVEGTIESTFRAKGHRHNQLTHPQRRTHKINPIYQPSKRSKRSEEKVPRQYDCKVCNIHFDRLKFLKDHNRENHGNINKVSCKMCDSQLAQKTNLKRHYREKHKLSDYQAFELVDKDEDINTVLSMTKEEMNEQSGNQSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00200241;
90% Identity: iTF_00259307;
80% Identity: -