Basic Information

Insect: Aldrichina grahami
Gene Symbol: grau
Assembly: None
Location: Contig6:6697278-6701098[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0052 0.21 11.6 3.4 1 23 275 298 275 298 0.94

2 8 0.00016 0.0065 16.4 0.9 1 23 306 328 306 328 0.97

3 8 0.0014 0.057 13.4 0.1 1 23 336 361 336 361 0.96

4 8 0.0056 0.23 11.5 0.2 3 23 368 388 367 388 0.97

5 8 0.23 9.3 6.5 0.1 2 23 397 420 396 420 0.92

6 8 1.3e-05 0.00054 19.8 3.5 1 23 427 450 427 450 0.97

7 8 4e-05 0.0016 18.3 1.8 1 23 455 477 455 477 0.97

8 8 0.00016 0.0064 16.4 4.3 1 23 483 506 483 506 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0052	0.21	11.6	3.4	1	23	275	298	275	298	0.94
2	8	0.00016	0.0065	16.4	0.9	1	23	306	328	306	328	0.97
3	8	0.0014	0.057	13.4	0.1	1	23	336	361	336	361	0.96
4	8	0.0056	0.23	11.5	0.2	3	23	368	388	367	388	0.97
5	8	0.23	9.3	6.5	0.1	2	23	397	420	396	420	0.92
6	8	1.3e-05	0.00054	19.8	3.5	1	23	427	450	427	450	0.97
7	8	4e-05	0.0016	18.3	1.8	1	23	455	477	455	477	0.97
8	8	0.00016	0.0064	16.4	4.3	1	23	483	506	483	506	0.98

Sequence Information

Coding Sequence: ATGCTGTGCTGTGTATGCTTATTGGAAAACCCTAATACAATGGGAATATTTGATGATATACACCAACAACTTAAAATAGCTGAAGTCATACACAAATACCTATGGTTTAAACCTCAACCTGATAACACTTTAACAACACAAATTTGTACAAGTTGTTGGCATAAAATAGATGATTTTCATATTTTTTACCAAAGTGTGGAGACATCCCATAAAGAATATGAGCATAGTCCATCATATAATATTAAAAGAGAAGTTCTATGTACTAGTCCTATAAAACTAGAGCAAGACTATAAAGAGGAAGCAATTAATAGTACGGGCGATGCTATTAATATTGATGAGAATATTCGGATAAAAAATCCATTGGAAGAAAATTACCTTAAGGATGTAGAATTTAATAACGAATCAAATGATGATGACTGTAGAACTTCTGATGACTATGAACCTTCTATTTCAAGCGAACAGGAATTTTCAATGGATGAAGAAACAGTGAATGATAAAGAAGATAAGCTTCAGACTGATACCATCATAAAACATAACACTAGATCTAAACGACACAGAAATTTGGAAAAGGAGAAAGCAATTACTAAGAAGAAAAGGATTGTTCAACGTTTAGATCCCATACATACAGAAGAAATGATTAAGAAACATATACCCATGGGTTGTAATTTATGTGTTTTTGTGGGTACAACTTTTTCAGATATTGTGCAACATTTTAGAGGTGTCCATCCTAAAGTTAGACCGTATATAATGTGTTGTGATAAAAAGTTGTCGAAACGATTTTTTGTGGCTCAGCATGCTTTAAAACACGAAGATCCGAATTGTTTCCGGTGCGATGACTGCTGTAAGTCCTTTACAACAATTAGTGGCTTACGAACCCACAACTTAAGTTACCATGCTCGCAATGAGGACCTAATTTACGCTTGTGATAGTTGTTCGAAAAAGTTTGCCCGTAAAAATTTATTAGAATTACATCAAACTTCACACATTCCAAAAGAACAATGGGAATATGTTTGTAATATATGTCCAGATAACAAAGCATTTGCAAGTTCATATTTATTAAATGTACACACAAGCATGAAGCATAAAAGAGAAATAAACATTTGTCCGGTATGTGCCAAAGAGATTAGAGATAAAAAGTCCTACGAAAAACATGTGCGTTTACACTATGAGGACAGTGGACCACGCGTTAAATGTCCTTATCCCGACTGTGATAGTTGGCTTAAAGATGAAGACAATTTAAAACAACATTTGACGCGACACAATCCTGAGGGAATAATTTATAAATGTAATGAATGCGGTAAAGAATGTAAAAATCGACGAGCATTAACGAACCATAAGCGTTATGCTCATTCGAATACGATTTTTCAATGCGATCAATGTGAGAAAACATTTAAGAAATCTATTTCTTTAAGAGAACACTTGACCCAACATACTGGCGAAACTTTATATAAATGTCCTTTTTGTACGAGAACTTTCAACTCAAACGCAAACATGCATGCTCATAAGAAGAAACAGCATCCTGTAGAATGGGAAGAGTGGCGTAAAAATAAACGTGGCAGTGCTCAGAAGTTAATAAATAGTAAAAATCCTTTAAATCAAAGTGATGAAAGTAATCTGATGGAATTAAATGATACATTACATTTATTATAA
Protein Sequence: MLCCVCLLENPNTMGIFDDIHQQLKIAEVIHKYLWFKPQPDNTLTTQICTSCWHKIDDFHIFYQSVETSHKEYEHSPSYNIKREVLCTSPIKLEQDYKEEAINSTGDAINIDENIRIKNPLEENYLKDVEFNNESNDDDCRTSDDYEPSISSEQEFSMDEETVNDKEDKLQTDTIIKHNTRSKRHRNLEKEKAITKKKRIVQRLDPIHTEEMIKKHIPMGCNLCVFVGTTFSDIVQHFRGVHPKVRPYIMCCDKKLSKRFFVAQHALKHEDPNCFRCDDCCKSFTTISGLRTHNLSYHARNEDLIYACDSCSKKFARKNLLELHQTSHIPKEQWEYVCNICPDNKAFASSYLLNVHTSMKHKREINICPVCAKEIRDKKSYEKHVRLHYEDSGPRVKCPYPDCDSWLKDEDNLKQHLTRHNPEGIIYKCNECGKECKNRRALTNHKRYAHSNTIFQCDQCEKTFKKSISLREHLTQHTGETLYKCPFCTRTFNSNANMHAHKKKQHPVEWEEWRKNKRGSAQKLINSKNPLNQSDESNLMELNDTLHLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259239;
90% Identity: iTF_00259239;
80% Identity: -