Basic Information

Insect: Aldrichina grahami
Gene Symbol: -
Assembly: None
Location: Contig10:2607449-2613018[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00048 0.02 14.9 3.2 1 23 658 681 658 681 0.97

2 8 0.00018 0.0075 16.2 4.7 1 23 686 708 686 708 0.97

3 8 1.4e-05 0.00055 19.8 1.6 1 23 719 741 719 741 0.97

4 8 0.00037 0.015 15.2 4.0 1 23 746 768 746 768 0.98

5 8 3.4e-06 0.00014 21.6 0.4 1 23 774 796 774 796 0.97

6 8 0.024 0.98 9.5 2.7 2 23 802 823 801 823 0.97

7 8 0.017 0.71 10.0 0.8 1 19 865 883 865 888 0.91

8 8 2e-05 0.00083 19.2 2.7 2 23 895 917 894 917 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00048	0.02	14.9	3.2	1	23	658	681	658	681	0.97
2	8	0.00018	0.0075	16.2	4.7	1	23	686	708	686	708	0.97
3	8	1.4e-05	0.00055	19.8	1.6	1	23	719	741	719	741	0.97
4	8	0.00037	0.015	15.2	4.0	1	23	746	768	746	768	0.98
5	8	3.4e-06	0.00014	21.6	0.4	1	23	774	796	774	796	0.97
6	8	0.024	0.98	9.5	2.7	2	23	802	823	801	823	0.97
7	8	0.017	0.71	10.0	0.8	1	19	865	883	865	888	0.91
8	8	2e-05	0.00083	19.2	2.7	2	23	895	917	894	917	0.95

Sequence Information

Coding Sequence: ATGATAAGGAAGATTTGTGCAATAGGTTGCCCACCAGGCAATAATCTTTTTAAATTTCCAACTAGAGAAAAAGATGAAGAAAGGAGAAAATTGTGGTTGGACTATTTTGATATGGAGGAACCAAATATTAAAGATGTATTTGCTTGCGATCGACATTTTTCACATTATCAAGCCACTCCAAAAGGAATTCGAAGAGATGCAGTTCCAGATGTACCGATAATATACAATAACCCAAATCCACCATTTAGAAGAAGGCAAAAAAGTTGGAGACAAAATGTCACTGTAGTTACTCCTAGAGATCCAGAATACATAATTTATCGAAAACAAACTGGAATATTTGCACAAAATGTATCTAATAAGAACAACATTCAATCGACACTTTCATATGAAAAATCAACGCCATTTATCAAAACTGTTTTTAGTTCAAAGGCCACGCAAACTAATACACGCATCTGTGGCTCAGTGCAGATTTCAGAATTTGTAGATGAATATCGCCTTAATTGTTTCTATTGTTGTGAAATATTTCCATTGGAAAAATGGCCCAAATTTGTGGATCATTTAAAAGAGAGACATTTTGAAGAAGAGGAGGCCTTTAAATGCTTTAAATATCTCTCAGAGGAACACGACTATACTCCCATAGGATTGCCATCGGCCAAAGTCAATTACAAATTGAATATAGTAACAAATTCACCATCTGAATCTTTAGTTTTTGGGCTTAATTCAACACTTTCTTTATTAAAACGACCAGTATTGCAAGAAAAATCGAATATAGATTCCTTACTTGATCCTATTATAGCACCACCACCACTTGAAACTGTTTTTATAGACTCAAGTCCATCACTACCAAAACCCATACTACTACAACCAGTGGAATCTTCAGATAAGGCATTTAGTATGTGCTTGGCTGACAAACTTATTAAGCTATTGGATGAAACAGTTTTAAATCCCAATTTTCAAAATACTGAAAAGCAGAACATGGCGATTACCAACAACATTGAAATTTTGAATAATTTCATAGAATCTGGGAGCTCTGCAATGGCAATGTCAATACCAACCTCTGCTAAAAAATTTAAACGCACAACCTCATCAAAAACTAAGCGACCAATTTATTCTCTATTTGGGGGTCAACAGAATATTTTATCCAGAAGAAATTCACTTTCATATTCATCTAAAAATCGTGTAGTAAAAAGAAGAATTACAGCGAAAGCAACTGAGTCAATAGCTAATGTTTTAACTAAAGTCGACTACAACGAACCAACAACATCCTCCATAACGCACTGTTCTAATAACGAAAATACAAAACCAATTAAGAAGAGGATTGTGCAACAATCTTCAAAAAATACATTCGAAAATATATACAAAACTATGAAAACAAAGCCAAAGGTGATCTCTTCCGGAATATTTTATTTAAAGGATATTAGCAGTAATATATTAACTAAGCGGCAAGCATCAAATAAGACTGCTTTAAGTCGCTGTCTTAAAAGGGCAAATACAATAGAAACAATAGAGCCAGAAGATGAACAAGAATATAAACCATTTTCCATTGAAAGTCTGCAGCTAAAACCCACAGAGCTTGTTTTCGAATACACACCACGGGTCATAATAGACTTGTTGCTGGACCGTATGCAGCAATATCCGGTTTTGTGGGAATACCATGATAAACCATTCAATGAAGACTATAATAAAGCCATCGAAGATCTGTGTCAAATAATCAACGTCAAATGGTCACTGAATATAGATTCTTTAAAAATGCGACGCAGTATAAATCATATAATAAGATTTTATCGTTATATGTTGCCATGCGAAAACATAAACAAATTCGCTGATTATTTTGAAAAATGTTCACTTTTTTTACCCTCATCTGTAGACGAAATTCCACAGGCTCGATGTTTTCTTTGTTGTTTGTGTTACAAAAATGATATTGATTTGAGACAACATCTGATACAAGAACATGAATCATTGAAATGGCCTTACAAGTGTAGGCACTGCACGGAACGTTTCAGGAATAGTGATGAATATGAGTTGCACAAACGTCTACCACATTATGTCGAAATTTTCACCTGTGAATTGTGCAATAAGAAGTTCAGTCGTCATTATTTATACCAAAAACATTTAGAGCTGCACAAACGAATTCAGATAACAGAAACTGGAAAGTATAAGTGTAACATATGTAGCAAAGAATTTAAATCCAACGGTGAATTAAAATCTCATAAAATTTATCACGGTGAAAGACAACACAAGTGTAATCTGTGTTCGAAATCCTTCTTTAATAGTACCGGTTTGATGTTACACTTAAAAAGACACCGCAAAGAATTAGATTTTATATGCGAAGTATGTGGTAAGGGTTTTATACATCAGGCGTACCTTAATGAACACATGGAAAAACACACTGGAGCTAAAGTCACTTGTAATATTTGCAATTTAAAATTAAGAAAATGCAGTCTAATGCGGCATCTACGTACTGTGCATGTGGCATGTGAAGGCACCATCGAAACTACATTTAGAGCAAAAAATCATAATTACAAAAGGTTACTGCGACCAATGCCATATTATAAACGGTCAAAAAAGCCCAAAGAGAACTTGCCACGGCAATACGTTTGTAAAATCTGCAAAATACCCTTCGATCGCCTCAAATTCCTGAAAGACCATAACGTACAGTTTCACTCCGATGTTGAGAAGTGGCCGTGTAAAGTATGTGGTTCTGAATTTAGACGAAAACACAATCTAAAACGTCATTATCGTGAAAAGCATAAATTGCATGTGTATCAAATTTACAAATTAGTCGATAAAAACGAAGACGTGCGTACAGTGATGGCAATCAAATCGGAAGAGTTAGAGAAAATGTCCGAAACGTTATCGTATTCACTGAATTGTCCTATCAGTGTTAAAACACCAAGTTGCCAAACAGCAATAATAAAATCAGATCCATCTGCAGGTGAGATTTGCTTTGAGGAAGAAAGAATGCAAAGTTCTTCAATACAATATGAAATAATGAAGGCTGTTGATAATATCTCTACAGAAGACATTAAAGTCGATGATGATCATACAATGACTGCATTTTTTAGTGATCTTTTAAGACAACCATAA
Protein Sequence: MIRKICAIGCPPGNNLFKFPTREKDEERRKLWLDYFDMEEPNIKDVFACDRHFSHYQATPKGIRRDAVPDVPIIYNNPNPPFRRRQKSWRQNVTVVTPRDPEYIIYRKQTGIFAQNVSNKNNIQSTLSYEKSTPFIKTVFSSKATQTNTRICGSVQISEFVDEYRLNCFYCCEIFPLEKWPKFVDHLKERHFEEEEAFKCFKYLSEEHDYTPIGLPSAKVNYKLNIVTNSPSESLVFGLNSTLSLLKRPVLQEKSNIDSLLDPIIAPPPLETVFIDSSPSLPKPILLQPVESSDKAFSMCLADKLIKLLDETVLNPNFQNTEKQNMAITNNIEILNNFIESGSSAMAMSIPTSAKKFKRTTSSKTKRPIYSLFGGQQNILSRRNSLSYSSKNRVVKRRITAKATESIANVLTKVDYNEPTTSSITHCSNNENTKPIKKRIVQQSSKNTFENIYKTMKTKPKVISSGIFYLKDISSNILTKRQASNKTALSRCLKRANTIETIEPEDEQEYKPFSIESLQLKPTELVFEYTPRVIIDLLLDRMQQYPVLWEYHDKPFNEDYNKAIEDLCQIINVKWSLNIDSLKMRRSINHIIRFYRYMLPCENINKFADYFEKCSLFLPSSVDEIPQARCFLCCLCYKNDIDLRQHLIQEHESLKWPYKCRHCTERFRNSDEYELHKRLPHYVEIFTCELCNKKFSRHYLYQKHLELHKRIQITETGKYKCNICSKEFKSNGELKSHKIYHGERQHKCNLCSKSFFNSTGLMLHLKRHRKELDFICEVCGKGFIHQAYLNEHMEKHTGAKVTCNICNLKLRKCSLMRHLRTVHVACEGTIETTFRAKNHNYKRLLRPMPYYKRSKKPKENLPRQYVCKICKIPFDRLKFLKDHNVQFHSDVEKWPCKVCGSEFRRKHNLKRHYREKHKLHVYQIYKLVDKNEDVRTVMAIKSEELEKMSETLSYSLNCPISVKTPSCQTAIIKSDPSAGEICFEEERMQSSSIQYEIMKAVDNISTEDIKVDDDHTMTAFFSDLLRQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259289;
90% Identity: iTF_00260114; iTF_00259289;
80% Identity: -