Basic Information

Insect: Aldrichina grahami
Gene Symbol: SCRT1
Assembly: None
Location: Contig35:886789-899515[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.9e-07 1.2e-05 25.0 1.5 1 23 508 530 508 530 0.99

2 5 0.00086 0.035 14.1 0.3 2 23 540 561 539 561 0.97

3 5 1.9e-05 0.00078 19.3 0.4 1 23 565 587 565 587 0.97

4 5 6.4e-08 2.6e-06 27.1 0.6 3 23 595 615 593 615 0.98

5 5 7.9e-05 0.0032 17.4 2.1 1 21 621 641 621 642 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.9e-07	1.2e-05	25.0	1.5	1	23	508	530	508	530	0.99
2	5	0.00086	0.035	14.1	0.3	2	23	540	561	539	561	0.97
3	5	1.9e-05	0.00078	19.3	0.4	1	23	565	587	565	587	0.97
4	5	6.4e-08	2.6e-06	27.1	0.6	3	23	595	615	593	615	0.98
5	5	7.9e-05	0.0032	17.4	2.1	1	21	621	641	621	642	0.94

Sequence Information

Coding Sequence: ATGCCACGCTGTTTAATGGCTAAGAAATGGAAGGCCTATCCTTGGCCCGACCGGGCGGAGGACAAATCCAACAACTCGTCACCTGCACCCACACAAACAACAACATCGGTATCGAGTGCCACGACTCCGGAACTGAGCATACAAATTATACCTAAGAAGGATGTGGAAACAAAATCTCGTCGATCTACCATCGACGAAGACGAAGAAATCGATGTTGTGGGTGATAATATTTTGGTAAATGCCACAACCACTACAACTGCTACTGCTACGGTCATTATAAAATCGAGTGATTTAAAATTATCAAATACGCAAACCGCTACAAATAATAATACAACATCCTCTTCTGCAACACCCTCCTCAACATCAGCGACAACCTCGTCAGCATCATCAGCATCTACGTCGTCGTCGTTATCGTCATCGTCATCATCGTCAACAACATCCTCTACAGCAACGTGTTGGGGTCCCTCATCACCAACGGCTGGAGCTACAGCTCCGAGTCCCCCTCCACATTCACCAGAAGCAGCTACACGTGGTACCACTAATTTATATAATGGTTATAATCATGAAATTTCGCCTCTACATTATACCGCGTACCTGCCTCGTCTAGAAAACGAAGTTACCGTCATAACAAGCACCTCAAATTTACATCAGCAACAAGCCCCCCCTCATCCATACAACTATCAAACGCCTCCGCCCTCGAATACATCGTCACCTTCATCGTCACCCTCGACACGCAGTAGCAGTTTGTCTTCGCCGTGTGAGCGTTTAAGTCCGCCCATTATACGCATTAAAACCGAAGCGTCTTTTAACGATGACATCGACGCGAGCAGTACCAAATCACGCAAATGTTATACAAGTACGGGCGCCGCTCTGTCTTTACCTCCTAAGAAAAAAGATATCTATCGGCCCTATTCGCTGGATGATAGACCCTCAAACGAACACTTGCGTTTAAGACAACCGGCAGAAGAAGATTTGCATGCAGCACATGCTATATTGGATCTCAGCGCCTCCACAGCATTTCATCCGCCCACACAGCCACATCAGCTGCAACAACAGTCTGCAGCTCAACAGCATTTAACTCATCAGCCTTTACATCCCTTGCATCACATAACCCATGCTATACAGTTGCAACAACAACAGCAGCAGCAGCAACACCTTCACCTGCCTGTTCATCATCAGCTGCAGGATGTTACACTCTCGGTGGCCACTACTACTCCCTCCATAGCCGATCTGGCTTTGGCGGCTAGTGTGGCGAACGAGCATCGACCCCGCTCTAATTCTTCCATGCATAGTTTACAAAGTAATTCGGATAGTGAACGGCAGCCCAGTTCACCGGCTGGTAGTGTACAAAATGAAAACAACAATACAACCAATCAATTTCCTAAAAATGGTGCTGCTGGTGCCTCCGTGAAAACTGTGGCCTACACCTATGAGGCGTTCTTCGTAAGCGATGGTCGATCGAAACGCAAAAACATTACAGATCCTCAGGCGGTGATACAGCAAGAACAACAGAAAGCCAAGTATACCTGCAGTGAGTGTGGTAAACAATACGCCACTTCTAGCAATCTGTCGCGCCACAAGCAAACACATCGCTCGTTAGACTCACAATCCGCCAAAAAGTGTCATACCTGTGGCAAAGCTTACGTGTCGATGCCAGCCTTAGCCATGCATGTACTAACGCACAAACTTTCCCACAGTTGTGGAGTGTGTGGCAAACTTTTCTCGCGTCCCTGGCTATTGCAAGGCCATCTAAGGTCCCACACGGGTGAGAAGCCTTATGGTTGTGCTCATTGCGGTAAAGCCTTTGCGGATCGTTCCAATTTAAGAGCTCACATGCAAACCCATTCGGTGGACAAGAACTTTGAGTGTAAACGCTGCCATAAATCCTTCGCTTTGAAATCGTACCTCAACAAGCATTTGGAATCGGCCTGTCTCAAGGATGAGGCTGACATGCAGTTCGATAGTACCAGTGACAGTGGTGGCATGACATCTCCTACACCAACTGAGGACTATAATCATCCTAGTTACCCCCAACAAGCACAAAATGGTTTTACAATAAGTCATATACCCCAACCAGTACCAGCAGCGGCCGTAGTTAAAGTAGAAGCCACGTTTGCGGGTTAA
Protein Sequence: MPRCLMAKKWKAYPWPDRAEDKSNNSSPAPTQTTTSVSSATTPELSIQIIPKKDVETKSRRSTIDEDEEIDVVGDNILVNATTTTTATATVIIKSSDLKLSNTQTATNNNTTSSSATPSSTSATTSSASSASTSSSLSSSSSSSTTSSTATCWGPSSPTAGATAPSPPPHSPEAATRGTTNLYNGYNHEISPLHYTAYLPRLENEVTVITSTSNLHQQQAPPHPYNYQTPPPSNTSSPSSSPSTRSSSLSSPCERLSPPIIRIKTEASFNDDIDASSTKSRKCYTSTGAALSLPPKKKDIYRPYSLDDRPSNEHLRLRQPAEEDLHAAHAILDLSASTAFHPPTQPHQLQQQSAAQQHLTHQPLHPLHHITHAIQLQQQQQQQQHLHLPVHHQLQDVTLSVATTTPSIADLALAASVANEHRPRSNSSMHSLQSNSDSERQPSSPAGSVQNENNNTTNQFPKNGAAGASVKTVAYTYEAFFVSDGRSKRKNITDPQAVIQQEQQKAKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHVLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKSFALKSYLNKHLESACLKDEADMQFDSTSDSGGMTSPTPTEDYNHPSYPQQAQNGFTISHIPQPVPAAAVVKVEATFAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00922371;
90% Identity: iTF_01261333;
80% Identity: -