Basic Information

Insect: Aldrichina grahami
Gene Symbol: -
Assembly: None
Location: Contig38:2278582-2284366[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9e-07 3.7e-05 23.5 3.8 1 23 346 368 346 368 0.98

2 8 2.2e-07 8.9e-06 25.4 4.3 1 23 374 396 374 396 0.98

3 8 0.00029 0.012 15.6 2.9 1 23 402 424 402 424 0.99

4 8 0.00011 0.0044 16.9 3.6 1 23 430 452 430 453 0.95

5 8 0.0002 0.008 16.1 1.5 1 23 466 488 466 488 0.96

6 8 6.1e-05 0.0025 17.7 5.7 1 23 553 575 553 575 0.99

7 8 0.14 5.9 7.1 0.4 2 23 585 607 584 607 0.92

8 8 0.46 19 5.5 0.1 1 23 609 632 609 632 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9e-07	3.7e-05	23.5	3.8	1	23	346	368	346	368	0.98
2	8	2.2e-07	8.9e-06	25.4	4.3	1	23	374	396	374	396	0.98
3	8	0.00029	0.012	15.6	2.9	1	23	402	424	402	424	0.99
4	8	0.00011	0.0044	16.9	3.6	1	23	430	452	430	453	0.95
5	8	0.0002	0.008	16.1	1.5	1	23	466	488	466	488	0.96
6	8	6.1e-05	0.0025	17.7	5.7	1	23	553	575	553	575	0.99
7	8	0.14	5.9	7.1	0.4	2	23	585	607	584	607	0.92
8	8	0.46	19	5.5	0.1	1	23	609	632	609	632	0.88

Sequence Information

Coding Sequence: ATGAGTTTTCTTTTTAATATTAATGTATGTCGCGTTTGTATGCAAAATGAGCAAAGCAGCGATTTATGGAGCAACAAGGACCTATTGGATAAATTTGAGTTCAGTACGCGCTTAGTGGTTACCGAAGAAGATAATTTGCCAAAAGCTATATGCTCTAGATGTACAGCACGATTAAAAGTTGCATACACCTTTATTAAAACTGCACACGAATCCGAAAATAATTTGAAATTATTTTTAACAAAAATTAGCACAGAGTTTAAAGAAGTCACTCAGGGAAATAAGTCTATTAAGAAGTCAATCAATGAACAAAATCTTACCGAGGATGATCTTTTATCACTAATGGACGACGAAAATCATGAAGATATTCTTACTGAAGTAGGCGTACACGAAAAACACAAACAATTTGCCCTTGAAAAAAACACAAAAACATGCAAAACGGAATTGGAAGGCGAGACAACAAAATTTCCTAATGAAATCATAAAATCGAAGGACGATGGTTTTGAAAATTGCAAAAGAAATGAAACAGTTTATCCTATAACTAAAGATATTTTATTGATACATGCTAATAACAATGATATTGATAATGAATACGAAGACAATTCACATTTTATGGAAATTCCAACTCAAGATGACGAGGAAGAGACGGAAAAAGAGCACTACAATGAAGAAGTTGAGGAAGATATTGCATTGGAAAAAAATCAAACATACACGAGCATTAATATGTTGGATGTAAATGATGAATCAGAAATCAACTCACAATCCACGGAATTAGCTATGGAAGAAGAAGAAAATCGTGATTACGAAACGATGGTTAATAGTCAAGATGATACCATACAATATCAAAGTATTTATGTCGATGAAAGTTCCATAGATGATACTAATACAAAAAATGATAATGACTACTATATAAATAATTCAAATGAAGACGAAGAAGAAACACACGAAAATCCACGTTCCACTAAAAAAGATGTCATTAATGAGCAAAAGGAAACAGGCATCAAATCATTTTATAAAACGGAAATGAATGTGCACCGATTTTATTGCAATAAATGCAGTCGAGATTTCAGTACTAAAACAAATTTAAATCGTCATATGCAATCACATGAAGGCAATAAACCATTTTCATGTACGGAATGTAAAAAGAGTTTCACGCAAAAATCAACTTTGAAACAACACATGTACACACATACAGGGGAGCGGCCTTATGTTTGTGAAGTTTGCAACCGCGGATTTACGCAATGTAAAAGCTTAATATTCCATATGCGTCGTCACACAGGCGAAAAACCATTTCATTGTGAATATTGTTTAATCACTTTCCGGCAGAAGGATGCTTTAAGGATTCACATCTTAAAACATCATGTTCTTATAGAGCATGGTGCGGATGGCAGTGAAATATTTACGTGTATTATATGTCAAAGGAAATTCGAAACTAAAGCAGAATTTAAAACACACATGAAAGTCCACACGGCAACTGCAGAAGTAGATAATACTGTTGAATTATTGCAAGCTGAACAAGAGTGGTCTACCATGAAAAGATCAAAAAATTCAAATAATTTTGGATCTGATTTACTAATGCCTATTGATTCTGAATGCATTAATGCTGCGGTTGTAAATGTTTCTGCATCATCTGCTGCAGAGCCAAGTCGTGCGAAAAAATTTCAGTGTAGAAAGTGTTTCAAATGTTTTGCATTAAAAAAAAGTTTATTACGGCATATGCGCATACACTATGTAAACAACGATGATGACTTAACAGAATGTTTGGATTGTGAATTGCAATTTTCATCTGCAGAGGTATATCAAGAACATATCTCGGAATGCCATCAATATGCATGTTCTGCTTGTCCTGAACTAGTCTTTAAAACTATACAAGACTTGAAGATACATATGTTTGAACATGACTTGGATCAGCAGGAACACCAACAATGA
Protein Sequence: MSFLFNINVCRVCMQNEQSSDLWSNKDLLDKFEFSTRLVVTEEDNLPKAICSRCTARLKVAYTFIKTAHESENNLKLFLTKISTEFKEVTQGNKSIKKSINEQNLTEDDLLSLMDDENHEDILTEVGVHEKHKQFALEKNTKTCKTELEGETTKFPNEIIKSKDDGFENCKRNETVYPITKDILLIHANNNDIDNEYEDNSHFMEIPTQDDEEETEKEHYNEEVEEDIALEKNQTYTSINMLDVNDESEINSQSTELAMEEEENRDYETMVNSQDDTIQYQSIYVDESSIDDTNTKNDNDYYINNSNEDEEETHENPRSTKKDVINEQKETGIKSFYKTEMNVHRFYCNKCSRDFSTKTNLNRHMQSHEGNKPFSCTECKKSFTQKSTLKQHMYTHTGERPYVCEVCNRGFTQCKSLIFHMRRHTGEKPFHCEYCLITFRQKDALRIHILKHHVLIEHGADGSEIFTCIICQRKFETKAEFKTHMKVHTATAEVDNTVELLQAEQEWSTMKRSKNSNNFGSDLLMPIDSECINAAVVNVSASSAAEPSRAKKFQCRKCFKCFALKKSLLRHMRIHYVNNDDDLTECLDCELQFSSAEVYQEHISECHQYACSACPELVFKTIQDLKIHMFEHDLDQQEHQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260074; iTF_00259198;
90% Identity: iTF_00260074; iTF_00259198;
80% Identity: -