Basic Information

Insect: Aldrichina grahami
Gene Symbol: -
Assembly: None
Location: Contig14:3306403-3308383[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.19 7.7 6.7 0.6 2 23 239 261 238 261 0.94

2 10 2.3 93 3.3 1.2 6 23 270 287 270 287 0.97

3 10 1.5e-05 0.00061 19.6 4.8 1 23 293 316 293 316 0.97

4 10 6.9e-06 0.00028 20.7 0.7 2 23 323 344 322 344 0.97

5 10 0.00085 0.035 14.1 0.3 1 23 351 374 351 374 0.96

6 10 0.032 1.3 9.1 0.8 2 23 379 400 379 400 0.96

7 10 0.0012 0.05 13.6 0.1 1 23 408 431 408 431 0.91

8 10 0.0014 0.058 13.4 0.0 1 23 438 461 438 461 0.96

9 10 1.9e-07 7.6e-06 25.6 2.3 1 23 467 489 467 489 0.98

10 10 0.00013 0.0054 16.6 5.8 1 23 495 518 495 518 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.19	7.7	6.7	0.6	2	23	239	261	238	261	0.94
2	10	2.3	93	3.3	1.2	6	23	270	287	270	287	0.97
3	10	1.5e-05	0.00061	19.6	4.8	1	23	293	316	293	316	0.97
4	10	6.9e-06	0.00028	20.7	0.7	2	23	323	344	322	344	0.97
5	10	0.00085	0.035	14.1	0.3	1	23	351	374	351	374	0.96
6	10	0.032	1.3	9.1	0.8	2	23	379	400	379	400	0.96
7	10	0.0012	0.05	13.6	0.1	1	23	408	431	408	431	0.91
8	10	0.0014	0.058	13.4	0.0	1	23	438	461	438	461	0.96
9	10	1.9e-07	7.6e-06	25.6	2.3	1	23	467	489	467	489	0.98
10	10	0.00013	0.0054	16.6	5.8	1	23	495	518	495	518	0.98

Sequence Information

Coding Sequence: ATGTCAATAAAACAATGTTGTAGTTTGTGTTGTACTACATGCGGTGAATATAAATTATTGCAAAATGAATTGGGCGAAAGCAATGAAGTCTATGAAATTACAGTGAAATATTTTGATCCCATGTTACTCACAGAAGAGGAGGGCAAAGACTCACAATACAATCAGGCACTTTGTCGGAACTGTTGGTTTCACATCGAAGAGTTTCATGAATTTCAGCAAACGGTATTGAAAACTCGAATGTTATGGGAAGATAAAGCAAATATTAAACAATTGCCAATTGAAGTAAAACAGGAAGACGAAAAGCCATATGCCAGTACAAAATATGTGGATGAGGAACAGTTTTATAGAAGTGACGATGACGATGAGGATCATTTTGATGATATGGAAAATTATGATTTCAAAACAGAATCACTATCGAGCTTAGACGATATTGTAGACGCCATAGCTATAGAAGCCGATGAAAAGGATAAGAAAAACAATTCGGCACAAAATGAAGAGAAAAACAAGAATGAATTACCAGCTAAAGCGCGCCGAGGAAGAAAGCCTAGAAATGCCACAAAATCTAAAGAGCCTGAAGACGAAGAAGATGGTGAAAGGGAAAAAAGAAAAAAACCCAAATTATCGGAAAACACAAAAGAGAAAGGAAGCTCTGCCCTTAATATGGAAAAAGCTAAGCAATCTGATGCTTTCATAGCCGAATGGAAACCTGAGCTTATATGTGATTTGTGCAGTGAAAGCGCTAATAATTTCGATAAACTTCGTAGTCATTTTAGGGAGAAACATAAAACAAGATTCTATATTAAATGCTGCGAACGTAAATTCTTTCGTCGTTGTGTCCTTGTCAATCACATACAATTACATCTTAATCCGGAAACTCACAAATGTGATATATGCGGAAAATCCAGTTCAACCAAGCACAATCTTAAACTACATAAAAAGGTTATGCACGAAGATACAAAACAACTAAAATGTGATATATGCGAAAAGCTTTTTAAACAAAAGGTTACATTGGAGCGCCACTTGTTAACACACTCTACGGGCAGCAAAGACTTTGTTTGCTCCGAGTGTGGCAAGGGTTATGTAGCGGAACAATTACTTAAATTGCATATTAAACATGTGCATAACGTTGATCGTGTTTGCGATCAGTGTGGCAAAACTATTCATGGATTTCAAGCTCTTAAGAAACATCTTATGGAGCATGCCGGCATTGAACGACCTACATTCCGCTGTGACATTTGCGGCGTTGAACTAAAGTCACCCAATGGTCTTAAACGCCACAAAGCTGCCTATCACAATGATGGTTCTACTATATATGTATGCGGGGTGTGCGGTAAAGTAGCTTCAAGCGAAAATGCTTTGTTGAATCACAAAAAACTGGTACATGTGGTAGAACGGAAACATAAGTGTACATATTGCGATAAAGCATTTAAACGTCCTAAATCATTACGCGAACATATTGCCACTCACACGGGTCAGGATCTCTATCAGTGTCCACATTGTCCGCAAACATTTAGAGTTAGTGCCAATATGCACCATCATCGCAAAAAAGTACATCCCGTTGAATGGGAAGAAGGTCGCAAAAATCGCCTGCAACAACCTAAAATTAATATAAATCAAGTTAAGAAACAAGTTATAATATGA
Protein Sequence: MSIKQCCSLCCTTCGEYKLLQNELGESNEVYEITVKYFDPMLLTEEEGKDSQYNQALCRNCWFHIEEFHEFQQTVLKTRMLWEDKANIKQLPIEVKQEDEKPYASTKYVDEEQFYRSDDDDEDHFDDMENYDFKTESLSSLDDIVDAIAIEADEKDKKNNSAQNEEKNKNELPAKARRGRKPRNATKSKEPEDEEDGEREKRKKPKLSENTKEKGSSALNMEKAKQSDAFIAEWKPELICDLCSESANNFDKLRSHFREKHKTRFYIKCCERKFFRRCVLVNHIQLHLNPETHKCDICGKSSSTKHNLKLHKKVMHEDTKQLKCDICEKLFKQKVTLERHLLTHSTGSKDFVCSECGKGYVAEQLLKLHIKHVHNVDRVCDQCGKTIHGFQALKKHLMEHAGIERPTFRCDICGVELKSPNGLKRHKAAYHNDGSTIYVCGVCGKVASSENALLNHKKLVHVVERKHKCTYCDKAFKRPKSLREHIATHTGQDLYQCPHCPQTFRVSANMHHHRKKVHPVEWEEGRKNRLQQPKININQVKKQVII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00200164;
90% Identity: iTF_00260058;
80% Identity: -