Basic Information

Insect: Aldrichina grahami
Gene Symbol: -
Assembly: None
Location: Contig184:543652-545644[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.2 2.1e+02 2.2 3.2 1 17 312 328 312 335 0.84

2 10 0.075 3.1 8.0 3.3 1 23 345 368 345 369 0.97

3 10 0.088 3.6 7.8 0.8 2 20 375 393 374 395 0.92

4 10 0.00015 0.0061 16.5 1.7 2 23 408 430 407 430 0.95

5 10 0.00024 0.0099 15.8 3.1 1 23 439 461 439 461 0.98

6 10 1.4e-05 0.00056 19.7 3.3 1 23 467 489 467 489 0.98

7 10 0.0011 0.045 13.7 0.8 1 23 495 517 495 517 0.82

8 10 0.00026 0.011 15.7 2.4 1 23 523 545 523 545 0.99

9 10 1.4e-06 5.5e-05 22.9 0.5 1 23 551 573 551 573 0.98

10 10 6.4e-07 2.6e-05 23.9 2.1 1 23 579 602 579 602 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.2	2.1e+02	2.2	3.2	1	17	312	328	312	335	0.84
2	10	0.075	3.1	8.0	3.3	1	23	345	368	345	369	0.97
3	10	0.088	3.6	7.8	0.8	2	20	375	393	374	395	0.92
4	10	0.00015	0.0061	16.5	1.7	2	23	408	430	407	430	0.95
5	10	0.00024	0.0099	15.8	3.1	1	23	439	461	439	461	0.98
6	10	1.4e-05	0.00056	19.7	3.3	1	23	467	489	467	489	0.98
7	10	0.0011	0.045	13.7	0.8	1	23	495	517	495	517	0.82
8	10	0.00026	0.011	15.7	2.4	1	23	523	545	523	545	0.99
9	10	1.4e-06	5.5e-05	22.9	0.5	1	23	551	573	551	573	0.98
10	10	6.4e-07	2.6e-05	23.9	2.1	1	23	579	602	579	602	0.98

Sequence Information

Coding Sequence: ATGGTAGGCTTATGTCGTTTATGCGCCTCCCTACGTAAAATGGATGCATTAGTCTCTATTAAAGATGAATGTAGTGAAATATGTGAAAAGTTGCGCAAATGCTGTCAACTCAATATCAAGATGCAGGATGCTCTACCCAAATCTATATGCCAGGAATGTATAGAAAACTTAAATAAATCACATAAATTTTATACAAAAGTAACCGAAGCTCAGGAAACTTTGAAAGCATTATATCCTGACTCACAAGAAGAATCAGTGCAGCCATCTCTAGTGGAAACTTTGTCAGCGGTAAAGGAAAATAGCACAAAGCGTAGCACATCTGTATTGGAGCGAGATAAAGTTGAAACAACAAGTGGAAATCAAAAAAAGGAAAATCCAGAAATCCCTGCAAAACAAATCAAATTAGAAAAATGTTTGGCAGTAAAAACTAACAATTCCTTAAATGAGTTCCAAAATGATAAGGGTGAAACGAAAACAATCAAATTGCGGGAAAACTTTATACAAGATGTATGTAAAATGCTGGATATGACCAAAGAAGAAGCCATGCTGGAGAGTTCTTATGAAATAATAGAAACTATAGAAGAAAATGATGTTGAAGATTTAACTGAGGAAGGTACAGAGAAATATTTTAATTATCAAAGTGTTTGTGAGCAGCAAGAAGAACATCATGTTGTAGAGGAGATTGCGGCAAAAAACCCTATAGATGTTTTAAATGATATTGAATTACAGGCAGCAGAGATTAACGAAAAACCTGATGATATTGTAGTACCGGATAACGGATTAAATATTGAATTTGAATATATGGATGATTATGAGGACGAAGAGGATGATGATGATATAGTTTCAAACGTTGATATTACACAGTCAATAAATGATGGTCAACTAGTAAAGCATACTCTTCCACAACAATTAGATTCTTGGAAACACTATAAATATGTATGTTTTATTTGCGACAGCAACTTTTCAAATTTTATGCAGTTATACTGTCACTTCACACAAGAGCACAAGAAAACACAACAGGACATGTTACAATACAAATGTTATGTTTGTCAAAAAATCATACCGCGTTATAATTTCTTCCTCAATCACATACGTTCCAAACACCATCCCAATTTAAAGTTGAGATGTGAGGTGTGCGATTTAAGTTGTCAGACCTTTGAGGAGCTTGCGCATCATCGCAGTATTAAATGTAAAGAAGCGAGCAAGAATGTACACATAGTACCATGTAATCAATGTTTTAAAAGTTTTCACAATGCATACGGTTTACAAAAGCATTACAAAATTCAACATACCAGCGTAAAAGGTAGATTGAAATACCAGTGTATGGAATGCAACAAAGAGTTTCAGTATAAGAGTTGTTTAAAAGTGCACGAGCAAGTTCACAGAGATAAAAATACATACCGCTGCAGCTTTTGTGATAGAACATTTGCCCATAAAAAGAACTTGGAATTACATCTTTACGTTCATGTAGATGAAAACTTATATAAATGCAATATATGTAACAAAAGTTTCAAAACCTACTTAATACTCGATCAACATCAAGTGATACACAGCGAAGAAAAACCCTTTAAATGCGAATTTTGTGATAAAAATTTCCGTAAAAAAATTCAAAAAATTGCCCATGAACGTACGCATACTGGCGAAATGCCCTTCACCTGTGGGCAATGTGATAAGCGTTTTCGTTTTCTCAGCGCTCTCAATGCTCATATTAAGATTCATACTGGCGCTAAACCTTATTCATGTGAATATTGTGATAAAACATTTGCTGATAGCTCAAATCGTAATAAACATATTAAACGTAAGCATGCCAATGGCACATGA
Protein Sequence: MVGLCRLCASLRKMDALVSIKDECSEICEKLRKCCQLNIKMQDALPKSICQECIENLNKSHKFYTKVTEAQETLKALYPDSQEESVQPSLVETLSAVKENSTKRSTSVLERDKVETTSGNQKKENPEIPAKQIKLEKCLAVKTNNSLNEFQNDKGETKTIKLRENFIQDVCKMLDMTKEEAMLESSYEIIETIEENDVEDLTEEGTEKYFNYQSVCEQQEEHHVVEEIAAKNPIDVLNDIELQAAEINEKPDDIVVPDNGLNIEFEYMDDYEDEEDDDDIVSNVDITQSINDGQLVKHTLPQQLDSWKHYKYVCFICDSNFSNFMQLYCHFTQEHKKTQQDMLQYKCYVCQKIIPRYNFFLNHIRSKHHPNLKLRCEVCDLSCQTFEELAHHRSIKCKEASKNVHIVPCNQCFKSFHNAYGLQKHYKIQHTSVKGRLKYQCMECNKEFQYKSCLKVHEQVHRDKNTYRCSFCDRTFAHKKNLELHLYVHVDENLYKCNICNKSFKTYLILDQHQVIHSEEKPFKCEFCDKNFRKKIQKIAHERTHTGEMPFTCGQCDKRFRFLSALNAHIKIHTGAKPYSCEYCDKTFADSSNRNKHIKRKHANGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259173;
90% Identity: -
80% Identity: -