Agra009688.1
Basic Information
- Insect
- Aldrichina grahami
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig3:3285205-3290454[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.2 1.7e+02 2.5 0.1 4 23 477 497 472 497 0.89 2 17 0.0025 0.1 12.6 2.5 2 19 509 526 508 528 0.95 3 17 0.015 0.6 10.2 0.7 2 23 570 592 569 592 0.94 4 17 0.74 30 4.9 0.4 5 23 602 620 599 620 0.92 5 17 7.3e-06 0.0003 20.6 1.1 1 23 627 650 627 650 0.95 6 17 3.1e-05 0.0013 18.6 3.1 2 23 657 678 656 678 0.97 7 17 0.36 15 5.8 0.0 1 20 687 706 687 708 0.92 8 17 0.062 2.5 8.2 2.4 1 22 728 749 728 752 0.91 9 17 0.086 3.5 7.8 5.1 1 23 757 779 757 779 0.95 10 17 0.33 13 6.0 0.2 1 23 795 820 795 820 0.96 11 17 0.13 5.2 7.3 2.1 1 23 833 856 833 856 0.96 12 17 0.00093 0.038 14.0 2.7 2 23 862 884 861 884 0.95 13 17 0.00026 0.011 15.7 1.4 2 23 888 910 887 910 0.92 14 17 0.012 0.5 10.5 3.4 1 23 916 939 916 939 0.96 15 17 0.0009 0.037 14.0 0.2 1 23 944 966 944 966 0.98 16 17 6.3e-07 2.6e-05 23.9 1.5 1 23 972 994 972 994 0.99 17 17 0.035 1.4 9.0 0.1 4 23 1003 1029 1000 1029 0.82
Sequence Information
- Coding Sequence
- ATGGCGGTTAATGTTTCCACATCTGCCAGTGTCTGTTTATATTGCAAAACAACGTCGGAAAGAGAGGCAGAAAAGGAATTTCATGAAATCTATGATGAAGTGGGAGTGGAATTACAATTGCCCACATTGGTTGAAAAGTTTTTCCACATTAAAGTAGTAAATGAAAACAAGCACACTCTATGTGATGATTGTGTTAACCGTTTAATAGAATTATATGATTTGGAAGAACACGCCAAAGAAGAAAAAGACAAGGTAGATGATGATTTTACAGAATTGCAAAGTTCCGGAGCCACAATTATTGAGCCGGAAAGTATAAATGAAGCAAAAAGTAAAGAAGGCTCAAAACAAGTTTATGAAAAATTTACCAAGCAGGTTGTAGAATGTACAAATAATCTGGGGCAAGATGAACCAGAAATATTTTTAGAAAATATTGAAATTATTGATCAGCCTAATGACACAGCAAATGTTGAGGAAAATGAATACACAGAAGATGAGGAAGCTCTTATTAGTAAAGATAAATCTGATATATTTGTTGACCAAGATATTCAAACTAACAATACTAATGCTGAAGATTTTACCCCAGAAAATTTTGAGATCGGTTTGGATCAATCCTATAATAATATAGTATGTAACAGTCCTGTAAGTGTAACAAACTCAAGTGAACAGGATTCCAATGAAGATATTGTATTTGTCGAAGATCAAGAAGACCATAATTCGGATATAGAAAATGATGATAACTCAAATAAAATTGGCAATCAAATTTCCCCAGAAGACCTTGAAGTAATAAATGACAGTCAAATACATGCAATTATAAAAGATGAACAAGTATCTGAGGTAACAAATGAAACATTTGAGAATAATTGTATGTATATTGTACAAAATGATATTATCGAAGAACATGTCTATGAAGATGAAGTAGAAAATGAAGTTGAAGAACATGAACTTGTATATTATGAGGAAGATTTGTCATGTGACAATGAGAAAGAATGCCTAAATGAAATATTGGATGAGTTGGAAAATGATAATATAGAATTGAATTCATTACATGTAGAAACAGACAATTTGGTAGACATAGAAACTGAATCATTGAATTCTAATGATACTGGGAACAAAATTATTTATAAAGATGATATTGATGTTGCTAACATTATTGAAAATGATGAGTATGATGTGGATGATCCCCAAGACGATACATATTCAATAGAAGAGGAGTATTTAATGGAAGAAATATCTTGCTCTCAGGAATTTGATTGTGTTGATATTAATGAGTATTTGGAAAAGGTTCTAGTAACAAAATTTCAAGATTTACAATTGGATTGGGAAATGGAATGTAAATTGTGCCATGACAAATACAATACATTTCAAGAAGTATTAAAGCATGCCTGTATAACACAATTCGAAGAGGAACAACAATTCAGCTGCATTATTAAAGATTGTGAGGAAACTATAAACAATTTGCAGGCTTTATCAAGACATTTAATATTACAACACTATGATAAATTGGAGAGCATACCCATTTATGGCAAATGTCCAGATTGTCAGAAAACATTTTCGAATTTTATAGATTTTAATAAACACTCTTGTTGTCGTACTATAAAGAGAAAAACCGGATCACCTAATTATTGCCAATCTTGTGATTTGGACTTTAAGTCATTAAAGAGATTTGTATTTCATATGCAATTTCATTTAACAAACCATCGGCCAAAGGTTTGTTTGTTATGTGGAAAATTATTTAATAATTCCAATGATTTCTTTGAACATACTCAATATGAACATAATCCAAATGCAGATATGGCTTGCATAAAATGTGATCGCTTCTTTAAGGAAAAAGATGTCTTTGACAGTCACATGGAATTACACGAAGATCTAAAATATCAATTTGCCTGTAAATATTGTCCCAAAAAGTATACTAATAAATACGGTTTAAATCAACACATGGATGTTTATCATAATAAATCCAAGGCCTTAAAATGTGATCACTGTGAAAAAGAATTTGTTAATAACTCATCATATCGTAATCACTTGAAATCTCATGCCGCTGATGTCCAAGTAGAATCCTTTATTTGTGCTACATGTGGTTTAATAACTAGTAATTCGGAATTGATGAAGGAGCACACTGAATCAGATGAAGAATCGGCATGTTATTCTTCCGAAATAGAAGAGAAAATATTAGGGTTGGGTTATACATGCGAAAACTGTTCAATAGATTTTCACACAATTAAGCAGCTTAAACAACATCGTTTAAGTGATAAGCATAGTGATGATTTATTCCATTGCGGTTTGTGTCGTCGTGCCTTCAAGACACTACGACATATGCGTAACCATTCTATTAGTCATAAAGATTTCGAAAAATGGCAGCAATCATTTCCAATAACACGTTATTTTGTGTGCAATGTCGGCGATTGTCAAGAGTTCTATCCAATTTGGACCTCATTATATTACCACAAAAAACGTCCGCATAAAACTAAGGGAAATACCGATACGCCTCCTACCGACTTTAAATGTCAATTTTGCCAACAACTATGTTCTTCGAAAATGTCATTGGCCGTCCACGTAGCTAGGAGTCATAATAATTCCAATATTAGTTGTTCTCACTGCAAACAAACATATAAATCTCAAAAGTTATTACAAGACCACATTGATAAATACCATATATCAATAAAATGCAACATTTGTTTTAAATCTTTTAAAAATCGCCGAAACCTAGATTCACACAGTAATTTGGTACACCTCAATGTAAAGCGATATTTTTGTCGATATTGCAATAAGGGCTATTTCCACAAAAGTGAAATGGAAATACACGAGAAGAAAGTTCATCCTGAATTTGCATATAAATGTGAAATTTGCGATTTTATAACTAATTATGCACAATCTTTGGAGATTCATATGGACAAACATAATAATAAGCAGAAATTTAAATGTACAATATGCAATAAGGCATTCGGACGGAAACAACTATTACAAGTGCATATGAAAAGGCATCAAAACAAAAAAGATTACATTTGTTCCGAATATTTAACTGAAAGCGGCTGTGACGCTGCATTCTTTACTTACAATCTATTGAAAATCCATATTCAAACTAAACATAAAAAAGACAGCAACAACAAACGTAAAATATTATCATCCAAAAAATATGTTGTAGAAATTGAAGATAAATCTTATGAAATATTTGATATTGATGAAGACAGCAGTACGCAAGTTAAGCGCCCTAGAGTCACTTCGGTAATTCGCATCAACAATGATGAATTTGAACAAGATGCTTTAGAGCTGGCATTGGAAAAGGAGTTGGATTCGCAAGAGCAGAAAAGTGATAATGAATATGAAACAATATGTGATTGA
- Protein Sequence
- MAVNVSTSASVCLYCKTTSEREAEKEFHEIYDEVGVELQLPTLVEKFFHIKVVNENKHTLCDDCVNRLIELYDLEEHAKEEKDKVDDDFTELQSSGATIIEPESINEAKSKEGSKQVYEKFTKQVVECTNNLGQDEPEIFLENIEIIDQPNDTANVEENEYTEDEEALISKDKSDIFVDQDIQTNNTNAEDFTPENFEIGLDQSYNNIVCNSPVSVTNSSEQDSNEDIVFVEDQEDHNSDIENDDNSNKIGNQISPEDLEVINDSQIHAIIKDEQVSEVTNETFENNCMYIVQNDIIEEHVYEDEVENEVEEHELVYYEEDLSCDNEKECLNEILDELENDNIELNSLHVETDNLVDIETESLNSNDTGNKIIYKDDIDVANIIENDEYDVDDPQDDTYSIEEEYLMEEISCSQEFDCVDINEYLEKVLVTKFQDLQLDWEMECKLCHDKYNTFQEVLKHACITQFEEEQQFSCIIKDCEETINNLQALSRHLILQHYDKLESIPIYGKCPDCQKTFSNFIDFNKHSCCRTIKRKTGSPNYCQSCDLDFKSLKRFVFHMQFHLTNHRPKVCLLCGKLFNNSNDFFEHTQYEHNPNADMACIKCDRFFKEKDVFDSHMELHEDLKYQFACKYCPKKYTNKYGLNQHMDVYHNKSKALKCDHCEKEFVNNSSYRNHLKSHAADVQVESFICATCGLITSNSELMKEHTESDEESACYSSEIEEKILGLGYTCENCSIDFHTIKQLKQHRLSDKHSDDLFHCGLCRRAFKTLRHMRNHSISHKDFEKWQQSFPITRYFVCNVGDCQEFYPIWTSLYYHKKRPHKTKGNTDTPPTDFKCQFCQQLCSSKMSLAVHVARSHNNSNISCSHCKQTYKSQKLLQDHIDKYHISIKCNICFKSFKNRRNLDSHSNLVHLNVKRYFCRYCNKGYFHKSEMEIHEKKVHPEFAYKCEICDFITNYAQSLEIHMDKHNNKQKFKCTICNKAFGRKQLLQVHMKRHQNKKDYICSEYLTESGCDAAFFTYNLLKIHIQTKHKKDSNNKRKILSSKKYVVEIEDKSYEIFDIDEDSSTQVKRPRVTSVIRINNDEFEQDALELALEKELDSQEQKSDNEYETICD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259191;
- 90% Identity
- -
- 80% Identity
- -