Basic Information

Insect: Aldrichina grahami
Gene Symbol: -
Assembly: None
Location: Contig13:1279036-1281964[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2 83 3.5 0.1 3 23 275 296 273 296 0.93

2 9 1.3e-05 0.00053 19.8 3.6 1 23 328 350 328 350 0.99

3 9 9.1e-05 0.0037 17.2 2.2 1 23 359 381 359 381 0.97

4 9 3.7e-06 0.00015 21.5 1.9 1 23 389 412 389 413 0.95

5 9 0.36 15 5.8 3.0 3 23 420 440 419 440 0.96

6 9 0.0027 0.11 12.5 0.3 3 23 450 471 448 471 0.95

7 9 0.00039 0.016 15.2 0.9 1 23 479 502 479 502 0.96

8 9 1.3e-07 5.3e-06 26.1 1.0 1 23 508 530 508 530 0.98

9 9 7.9e-06 0.00032 20.5 2.0 1 23 536 559 536 559 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2	83	3.5	0.1	3	23	275	296	273	296	0.93
2	9	1.3e-05	0.00053	19.8	3.6	1	23	328	350	328	350	0.99
3	9	9.1e-05	0.0037	17.2	2.2	1	23	359	381	359	381	0.97
4	9	3.7e-06	0.00015	21.5	1.9	1	23	389	412	389	413	0.95
5	9	0.36	15	5.8	3.0	3	23	420	440	419	440	0.96
6	9	0.0027	0.11	12.5	0.3	3	23	450	471	448	471	0.95
7	9	0.00039	0.016	15.2	0.9	1	23	479	502	479	502	0.96
8	9	1.3e-07	5.3e-06	26.1	1.0	1	23	508	530	508	530	0.98
9	9	7.9e-06	0.00032	20.5	2.0	1	23	536	559	536	559	0.98

Sequence Information

Coding Sequence: ATGGATATGGAATCATGTTTATTGTGTCTGGATATTGAAAGTGCTGTAGTTGGAATTATAAGAGTGAATTCAATAGAATGGGAAACAGAGAATATGAAACATTTAATAGAGAAACACTTGTGGTCATTGGATATTTCACATACGTCCAGTTGGATATGCATCAGTTGTTGGCAAGAGTTGGACAATTTTCACAAATTTTATGAACGCATAGAACATGCTCATGCAATATTGACTAAAAACATTGAAACAGGGGACGTAAAAGAATCGATGCAGTATGATGAATTAAAAAGTCCAAATGTATATAAAGAAGAATTTATTGATAGTTCTATTGAAACCGAGATATTAATGGAACAACCTTTATCAACAGAATATGTGACAGAAAGTGAAAATCCTTTAATAAAAGAAGAACAAGCCGACGAAACATTACCGGAAGAGATGCCTCTTAAGCAAAGACGTAGAAGGGGGCGGCCAACAAAAGCAGTGGTGAGTGATTTAACAAATAGTACTGAAGATCCGCTAAAGAAAAGGAAAAAGGTTAAACTTATTGCAAAAAATCAAAGAAGTAAAGACATTTCTAAAACTCAAAACGTACAAGCTGAGAGCTCTTTTATTGACAAAGACAATGAAAAACCTTTGGTAAAGCATGAAACTAAAGATTCAAATATCTTAGAGTGTGTCATTGAAAATGATGACTCTGACACAGAATATGAAGAACATCATGACAAACAATCCTTTGCATTTTGTAAGAAAAAGCGTAAAAACCCTGATGAGAAGACTAGAAAAGAACATGATAAAATTATAGCTGAATATTTCAAAATATTCTGTAGTCTTTGCCAAATACCCATTGAAAATTTTATTGCGTTACGTAAACACTTTCGCGAGGAACACAGTAAACGTGGCTTTGTAATATGTTGCAAGAAAAAAATTTTCACTCGTCCCATTCTAGTTGATCACATACACTTTCATTTGGACCCCAACTATTTTAAATGTAAACAATGTGAGAAAGTATACTCCGATCGCTGTACTTTAGAGAGTCACATGAAAATCCACGAAGATGGTCAACAAGATCGTAACCACAACTGTAATACATGTGGAAAATCATTTGTGGGCACTACACAGTTAGAAAATCATAAACTTACCCATGCTCCAGATTATGAGAAAAAGTTTTCGTGCAACGAGTGCGGTAAATTTTTTACTACATTATACAGCCTAAATTATCACATACAAGCAATACATCACAATAAGTATGTTAAAATTTGCGATATTTGTGGCAAAACAATGCGCTGTCGCAATTCATTTAAACTTCATATGGAAAAACATGATAACAAACTAGCAACTCCTATTAATTGTGATATTTGTGGTCTACGTTTAATTGATAGGCGTGGCTTAAGACGCCACAAAAATTCACAACATCCTGTTGGAGGCAAAAAAGAATACTCCTGCCATATATGCTCGAAAGTATCACCAAATCTAAGAGCACTTCGTACACATGTACGTTTTGCCCACGAAACGGGCTACATACATAAATGCACAATGTGCGATAAAGCATTTAAAAGACCTGAAGCATTAAAGGAACATATGGCTACCCATACTGGTACTCCTTTATATACTTGTCCTTGGTGCCCGAAAACATTTATATCGAATGGCAATATGCATAATCATCGTAAAAAGTCTCATCCTAAAGAATGGGAAGAAGCTCAAAGACAAAAATATGGCGGAATATTTCCATCGAATTGTAAACCGCCAATCACTTTGAATACAAATAATACATTGTAA
Protein Sequence: MDMESCLLCLDIESAVVGIIRVNSIEWETENMKHLIEKHLWSLDISHTSSWICISCWQELDNFHKFYERIEHAHAILTKNIETGDVKESMQYDELKSPNVYKEEFIDSSIETEILMEQPLSTEYVTESENPLIKEEQADETLPEEMPLKQRRRRGRPTKAVVSDLTNSTEDPLKKRKKVKLIAKNQRSKDISKTQNVQAESSFIDKDNEKPLVKHETKDSNILECVIENDDSDTEYEEHHDKQSFAFCKKKRKNPDEKTRKEHDKIIAEYFKIFCSLCQIPIENFIALRKHFREEHSKRGFVICCKKKIFTRPILVDHIHFHLDPNYFKCKQCEKVYSDRCTLESHMKIHEDGQQDRNHNCNTCGKSFVGTTQLENHKLTHAPDYEKKFSCNECGKFFTTLYSLNYHIQAIHHNKYVKICDICGKTMRCRNSFKLHMEKHDNKLATPINCDICGLRLIDRRGLRRHKNSQHPVGGKKEYSCHICSKVSPNLRALRTHVRFAHETGYIHKCTMCDKAFKRPEALKEHMATHTGTPLYTCPWCPKTFISNGNMHNHRKKSHPKEWEEAQRQKYGGIFPSNCKPPITLNTNNTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260042; iTF_00259162;
90% Identity: iTF_00259162;
80% Identity: -