Agra009117.1
Basic Information
- Insect
- Aldrichina grahami
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig81:1137617-1159423[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 1.4 59 3.9 1.4 1 23 45 68 45 68 0.83 2 26 0.0079 0.32 11.1 1.9 2 23 275 297 274 297 0.96 3 26 0.12 5 7.3 2.0 1 23 307 329 307 329 0.98 4 26 4.9 2e+02 2.3 0.1 2 23 336 356 335 356 0.90 5 26 0.0026 0.11 12.6 0.8 1 23 362 384 362 384 0.97 6 26 2.1 86 3.4 5.6 3 21 392 410 390 412 0.94 7 26 3.8 1.6e+02 2.6 0.6 1 13 415 427 415 430 0.90 8 26 0.00035 0.014 15.3 0.9 1 23 536 559 536 559 0.97 9 26 7e-05 0.0028 17.5 3.9 1 23 569 591 569 591 0.99 10 26 0.66 27 5.0 0.0 1 23 597 619 597 619 0.91 11 26 0.012 0.49 10.5 0.1 1 21 625 645 625 647 0.91 12 26 0.0076 0.31 11.1 7.8 3 23 655 675 653 675 0.98 13 26 0.046 1.9 8.7 1.0 1 18 678 695 678 695 0.94 14 26 0.00048 0.02 14.9 4.5 1 23 830 853 830 853 0.96 15 26 0.0015 0.06 13.4 1.1 2 23 864 885 863 885 0.97 16 26 0.00023 0.0092 15.9 0.1 1 23 918 940 918 940 0.98 17 26 0.00029 0.012 15.6 4.6 1 23 946 968 946 968 0.98 18 26 0.00028 0.012 15.6 0.3 2 23 1140 1162 1139 1162 0.95 19 26 0.042 1.7 8.8 0.7 2 23 1169 1190 1168 1190 0.96 20 26 8.3e-05 0.0034 17.3 0.3 1 23 1220 1242 1220 1242 0.98 21 26 0.032 1.3 9.1 4.2 1 23 1248 1270 1248 1270 0.96 22 26 0.075 3.1 8.0 5.4 1 23 1420 1443 1420 1443 0.97 23 26 0.0022 0.09 12.8 10.0 1 23 1454 1476 1454 1476 0.98 24 26 3.8 1.6e+02 2.6 0.1 1 23 1482 1504 1482 1504 0.71 25 26 0.00031 0.013 15.5 0.2 1 23 1510 1532 1510 1532 0.96 26 26 0.0046 0.19 11.8 2.2 3 23 1540 1560 1539 1560 0.98
Sequence Information
- Coding Sequence
- ATGCCTGTTGACGTTATACAGCCATCTTCTATGCTGGGGCAGAAGAGAGCCCGGGAAAGCATAACTTTGTCAGACGATAGCGTCTCCAAATGTGGTGAGCTGTTTGTCACCAATTGTGCCGACAAATGGACATTCTATTGTACATATTGCCAAAAGGCTACCACTGATATTGGAGTGTTCATTTGCCACATCAGACTGGAACATTTGTATGAGCATCAAGATTTGCAACAGAGCGAACAAACTCCTTCTGCACCGGCCAGTAATGTGCCCACATTACAAAACGATATAGATCGCTCCTCAGCCGGCACACCAATCGAATGTTCTCTACTCAGCGAAGAACAAGCCGCCAACACAGAACAGCAGCAGCCAATGGAAAGTCATATAGTTAAAGAAGAACCAACCATAGTGGCCAGTGGACAAGAACATTTTGACTATGAGGCAATTAGTACTACAGTTTCAAAAATTGTAGATATTTCCGCCTTAACCCAGCCGGCAAGTAATGAAACGGAGGATGGTATTTCTGATAAGATTTCCGTGTCTTCAAATACTTTAGAGGAACAATTTAATGAAGAATTTGTAGCGCTATCACCAAAGCAGCCAGAAGCCGAAACCATTAAAACCATAGAAGTAGTTTATATAAACGATGAAATTATAAATGAGGATGACATACATGATGTCAGTGATTCTGCCGGTTCTCCCACCGATGGTGATAGCAATGAAGATGAAGAGGTATTAAATGAATCTGGCACAGATGGGGACGACAACGAGGCCAGTGTTAGTAAAGTTACAAAGGAGAAAAAAGGCAAACTGGTGTTTCTTAATAAATGTCAATATTGCAAAAGATATTTAAGAACTAAAAATGGCCTAATTAAGCACATAATAAAAAGGCATGATAAAAACTATTACCAGCAATTTCCCTATCAATGTCAAAAGTGTATTAAAGGTTTCAAAAGTAGAAATGGTTTGAAATTTCACCTAAAAATCCATGGTAGTTTAGTGTTTGTACAGTGTCCTCTGTGTCCAGCTAATCTCCGTGACAACTATTTCGCTACACACATTATGACGCATGAAAGCGAGACGTGTTTTCCCTGTCAGGTTTGCGGCGAAATTTTTAGCAGCCATGAGCAACGTTTGCAACATTGGAAGTCACATGCCGCAGACCAGCCATTTGGTTGCAATATTTGCTATCGGCGTTATAAGAAACATCAATATCTAGTAAAGCACTTGAAATGCCACAAAACCTACAAGTGTTATTTTTGTAAAGAGGAATTTAATTCACCGGCTGCCCAGCGGCCACCCTATGTTTGTCGAAACTGTGAGAAATTGCGACACATAAAGAAAAAAGTTAAATATCTAAGATATAAGGAAGCGGTAAACATAAAAGAGGTTAACCAAGAAACGCAACTACAGCAAGCGGACAACGAAAATTTAGCCAATGAAGACTCACATTGTAATTTTTCTCTCAATCCAACTGATGACTCAAATAAAGCTGCCTCAAATGAAGAGGACTCAAATTTAGAACCTATTGATGACAATACGCCCAGCGGCAGTTTAAACTATACCACACAAACTATCAATCATGCAAATAAAGGTGTTATACTACAGTATAAATGTCAGGATTGCAAATATACATTTGCCACAAAAAGGGGTGTGCTCAAACACTTGGCCAAATGGCATCGCAAGTACAAGCAAACCAATTTAGCCTTTAAATGTGAGCACTGCAATAGAAGTTTCCAAACTAAGCCGGGCCTCAATTATCACCTCAAGACCCATGACAAAAACAATCAATTTCAGTGTCCCGTGTGTCCGCTAACTGTCTTCCGCGAAAGTATTTTCGTGGCTCATGTCATGTTGCACGAACACGAGTCTTGCTTTCCCTGCCAGGTGTGTGGGAAAATCTTTCCCTCAAATGCCGAAAGAGTGGCCCACTATCAGCCGCACATCAAAGAGAGACCCTATGGTTGTGATATTTGCTATCGACGTTTTTATCATCATCATTATCTAAGAAGTCACATGAAAACGCATGGTGTATATTTCTGTAATTTCTGTCCGCAACATTTCAGATCAGCTGAAAATCTACAAAAACCCTATGTGTGTGGAAATTGTGAAAAGTTACCGGATATAAAAAGCACCGTAGAGCATCAACGATCTTTGTCGAGCAAAAAACATAATACCACCAAAACCTCAAATCCTGCAGAGAATCGTAACGAGCAATTTTTTGCCATAACAGCAGTTGGACGACAACAAACACAACAGCAAGATGATAAAGAACTCGTACAAGTTATTTATGTAAACGATCAAAAGGACCCGGCAATTGCAAATATAGAAGACAACAATGAAGAAGGCATTGATACCATATCATGTTATGCTTCCAGCGATGAGGATGAGGAATATCTAACAGATTTAGAAAGTAACGATGGCCATGAAGCCGGCTGTAGCCAGGCTAGACATGCGAAAAGGGGGAAAACAATCGGCCTAGCTGAATTACACAAGTGTAATTCCTGCGAACAAAGTTTCAAAACTAAAAAAGGCTTGCGTCAGCACATGTTTCGTATACACTACAAAAACTATCACAAGCAATTGCCACTGAAATGTGGCAAATGCAATAGAGGCTTTAATACCAGAAGAGGCATACGCATACACTTAAAAACCCACGACGAAAATAATCTTTTACAGTGCCCGGTCTGTTCGTCTAAGCATCAAAAGCATTATTTTATCAATCATGTATTGACGCATGAAAGCGACAGCTGCTTTCCTTGTCAGGTCTGTGGCAAAGTGTACAACAGTCCTGATGAACGCCTGCGACATTGGGAGACACATGCCGCAGACAAACCATTTGTGTGTCTGTATTGTAATCGCCGTTATAAACAACAGCAATATTTGACACATCATTTGAAAATTCACTGTCAATATCATTGTCACTTCTGTACGAATGAATTTAATTCGATCGAGACACAACGATCGCCCTATGTCTGTCCCAGCTGTGCAGAATTGCCCGAGGTAAAGCAGAAAATAGAGCAACTAAAATCGTTGGCGAAGAAAAGTCAGCATTTATTGGAATCGGATGAGAATACATATCTTGCAACACAACAACCTACTGCTGGAACTAACGAGAAATTTCTTACCATAACACCAATAGACAGCCAAGAAACACAACAACAACTAAGCATGGAACAAGATAATAAAGAACTAACTCAAGTCGTTTATGTTAAGAATGAAGCTGATGAAAAAAATGAATATAAGGAGACTACTAATGAAAATCCAGAAGAAGTTAATGATTCTGATACTTGTTATTCTCTAAATGCCGACGACGATAACGATGATGATACAGATTTAGAAAGTAACGATGGCAATGAAGCCAGTGGCAGTAAGAGCAAACGAAAACCACTGCCGGCGGACCTTGACTTATCCAGCCTCAAATGTCCATATTGTCCGGCAGGATTTAAAAATAAATCAAGTGCTACCCGCCATGTAATACGCTACCATGGCAATAAACTACCTATAAAATGTGGTAAATGTCATCGGGGTTTCCTTAATGCAAATGGTTTAAAAGTCCATTTAAAAGCTCATGACCATTTTCAGTGTCCCATCTGTAAATCAGAGCACATAGAGAACTATTTCATTACACATATTTTGACGCACGAAAGCGACACTTGCTTTCCGTGCCAGGTCTGTGGCAAGATATATAGCAGCCAAGCAGAACGAATGAGACACTGGAAGACTCATGCTAAAGAGAAACCATTTGCATGTAATATTTGTTTCCGGCGCTATGGTAAACTGCACTATCTAACTCGACATTTAAAATTCCACAATCAATATCATTGTAGTTTCTGTGTCATTGCATTCAATTCAATTGAGGCCTTACGAGCGCCCTATGTTTGTCCGAAATGTGAAAAATTACCCGATATAAAGCAGAAAATTGAAAATCTAAAAATGTTCATGAATAACAGCGATGTTGTAGCCCATGATACGGATGAGAACACCCTTACACCTTCAAATCCTGCTGAGGAATTTGTGGTACCTTATGAATTGCCATCAGCAGCAACTGATCAGGAAATAACAGAAAATAAGCCACACTTTTTAGAAGAATTCTCTATAAAAGATGAATTAAATACCAACATAGATAGCACTTTAAACGAAGACCTGAAAGATACTCATGATGATGATGGTGAACAAACATATGCCGAAAACTCAGATTTAGAATTTATCGACAATACAGCAACAATACCAACCCACATAGACACTGACACCACAGCACACAAATGCCAGCACTGTGAACGTGATTTTCACTCTAAACAGGGCTTAGATCTGCACATCAGACAAATTCATAACAGCACTAGCAGCGAAATTGCTTCTAAACACAAATGTCTAGAGTGCCATAAAGAATTCCGCACCAGATCGACCCTATCGCATCACAAGAAAACCCACGACAAAAGCAATCAATTTCAATGTCCTGTGTGTCCGACCAGGAAATTTGGCGAAGGCTCTTTCATTGTTCATGTCATGTTGCACGAAAATGAATCGTGCTTTCCGTGTCAAGTATGTGGTAAGATATTTACCACCAATGATAAACGTATGGCACATTGGGAGAGCCACATTAAAGAACGACCGCATGGCTGTAAAATTTGTTATCGACGGTTTGCCCAGAAACATATTCTACAGCGTCATATGAAAGCCCACAGCCAATAA
- Protein Sequence
- MPVDVIQPSSMLGQKRARESITLSDDSVSKCGELFVTNCADKWTFYCTYCQKATTDIGVFICHIRLEHLYEHQDLQQSEQTPSAPASNVPTLQNDIDRSSAGTPIECSLLSEEQAANTEQQQPMESHIVKEEPTIVASGQEHFDYEAISTTVSKIVDISALTQPASNETEDGISDKISVSSNTLEEQFNEEFVALSPKQPEAETIKTIEVVYINDEIINEDDIHDVSDSAGSPTDGDSNEDEEVLNESGTDGDDNEASVSKVTKEKKGKLVFLNKCQYCKRYLRTKNGLIKHIIKRHDKNYYQQFPYQCQKCIKGFKSRNGLKFHLKIHGSLVFVQCPLCPANLRDNYFATHIMTHESETCFPCQVCGEIFSSHEQRLQHWKSHAADQPFGCNICYRRYKKHQYLVKHLKCHKTYKCYFCKEEFNSPAAQRPPYVCRNCEKLRHIKKKVKYLRYKEAVNIKEVNQETQLQQADNENLANEDSHCNFSLNPTDDSNKAASNEEDSNLEPIDDNTPSGSLNYTTQTINHANKGVILQYKCQDCKYTFATKRGVLKHLAKWHRKYKQTNLAFKCEHCNRSFQTKPGLNYHLKTHDKNNQFQCPVCPLTVFRESIFVAHVMLHEHESCFPCQVCGKIFPSNAERVAHYQPHIKERPYGCDICYRRFYHHHYLRSHMKTHGVYFCNFCPQHFRSAENLQKPYVCGNCEKLPDIKSTVEHQRSLSSKKHNTTKTSNPAENRNEQFFAITAVGRQQTQQQDDKELVQVIYVNDQKDPAIANIEDNNEEGIDTISCYASSDEDEEYLTDLESNDGHEAGCSQARHAKRGKTIGLAELHKCNSCEQSFKTKKGLRQHMFRIHYKNYHKQLPLKCGKCNRGFNTRRGIRIHLKTHDENNLLQCPVCSSKHQKHYFINHVLTHESDSCFPCQVCGKVYNSPDERLRHWETHAADKPFVCLYCNRRYKQQQYLTHHLKIHCQYHCHFCTNEFNSIETQRSPYVCPSCAELPEVKQKIEQLKSLAKKSQHLLESDENTYLATQQPTAGTNEKFLTITPIDSQETQQQLSMEQDNKELTQVVYVKNEADEKNEYKETTNENPEEVNDSDTCYSLNADDDNDDDTDLESNDGNEASGSKSKRKPLPADLDLSSLKCPYCPAGFKNKSSATRHVIRYHGNKLPIKCGKCHRGFLNANGLKVHLKAHDHFQCPICKSEHIENYFITHILTHESDTCFPCQVCGKIYSSQAERMRHWKTHAKEKPFACNICFRRYGKLHYLTRHLKFHNQYHCSFCVIAFNSIEALRAPYVCPKCEKLPDIKQKIENLKMFMNNSDVVAHDTDENTLTPSNPAEEFVVPYELPSAATDQEITENKPHFLEEFSIKDELNTNIDSTLNEDLKDTHDDDGEQTYAENSDLEFIDNTATIPTHIDTDTTAHKCQHCERDFHSKQGLDLHIRQIHNSTSSEIASKHKCLECHKEFRTRSTLSHHKKTHDKSNQFQCPVCPTRKFGEGSFIVHVMLHENESCFPCQVCGKIFTTNDKRMAHWESHIKERPHGCKICYRRFAQKHILQRHMKAHSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -