Basic Information

Insect: Aldrichina grahami
Gene Symbol: -
Assembly: None
Location: Contig17:4783656-4788417[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.7e-06 7.1e-05 22.6 0.3 3 23 211 232 210 232 0.98

2 11 0.061 2.5 8.3 1.2 1 23 252 275 252 275 0.96

3 11 0.065 2.7 8.2 2.6 1 23 291 314 291 314 0.97

4 11 5.2 2.1e+02 2.2 6.1 1 23 321 344 321 344 0.97

5 11 0.0027 0.11 12.5 0.5 3 23 456 477 455 477 0.95

6 11 1e-05 0.00041 20.2 1.6 3 23 486 507 485 507 0.97

7 11 0.038 1.5 8.9 3.3 1 23 527 549 527 550 0.95

8 11 8.4e-05 0.0034 17.3 0.8 1 23 556 578 556 578 0.96

9 11 5.3e-07 2.2e-05 24.2 3.0 1 23 584 606 584 606 0.99

10 11 3.8e-08 1.5e-06 27.8 3.0 1 23 612 634 612 634 0.99

11 11 6e-05 0.0024 17.7 0.1 2 21 641 660 640 664 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.7e-06	7.1e-05	22.6	0.3	3	23	211	232	210	232	0.98
2	11	0.061	2.5	8.3	1.2	1	23	252	275	252	275	0.96
3	11	0.065	2.7	8.2	2.6	1	23	291	314	291	314	0.97
4	11	5.2	2.1e+02	2.2	6.1	1	23	321	344	321	344	0.97
5	11	0.0027	0.11	12.5	0.5	3	23	456	477	455	477	0.95
6	11	1e-05	0.00041	20.2	1.6	3	23	486	507	485	507	0.97
7	11	0.038	1.5	8.9	3.3	1	23	527	549	527	550	0.95
8	11	8.4e-05	0.0034	17.3	0.8	1	23	556	578	556	578	0.96
9	11	5.3e-07	2.2e-05	24.2	3.0	1	23	584	606	584	606	0.99
10	11	3.8e-08	1.5e-06	27.8	3.0	1	23	612	634	612	634	0.99
11	11	6e-05	0.0024	17.7	0.1	2	21	641	660	640	664	0.89

Sequence Information

Coding Sequence: ATGAATGAAAAATCAGTACAAAAATGTAGAACATGTCTTAAGATCTGTAATAAAATGTTACCTTTAAACGAACATGCAAGAGGTTGTAGTCCCAAGAGGACCTATGGCCAACTACTAACGGAACATGCCAAAATAGATTTTACTTCAGATTATGAGCGTCTCATGCCTCAACATTTATGTGCCTTGTGCTGTCGTGAGTTGAGGTCCACTAATGCATTTGTTCTACAAGCCAAGTATTCCTATAATGAACTTATAAATCTTATCTCTAAACAATTGGATTGTCTGCAAGAAAAAACTATTGATTTGCCAACAAATGGAAACGAATTGGAAAAATCCCTTGATATCAAAATAGAAAATTATATTGATGAATACCATGCGATAGAAAGAAAAGTCCAAGATACTACAACAGATGGAGTCAACATTGTAATCACGAGTACTATGCTGAAGTCTGAAGTATGGGAGGAATCAACAGATAATGTTAAACCTATTAAAAAGGATGATGAAATGGATATTATTGATAATGACCTAAATGATTTACCGCAAACATGTTCTACGACGTCTGATAATACTATTGCCTCACATTTAAATGATACTTCTGAGGAGCCTTTGGAATCTCATATTGACGCAGCCTGTCCCATATGCGGTAAAATTATGAGCAGACGTGATAATTTATTAAAACACATGCGTACACAACATGATATAGAAGCGCCTAGTACATATTTAGACAAACATAAACCTGAACCAAAAGAAGTGTTTGCCTGTAAAATATGCCCTGATAAATACATTAATAAATACACGTATTTATATCATATAAAAAATAAACATGGTGTAGATGAAAGTATGGGAAAACAAAAACCGAAGGCTAAAATTTTTAAATGTCGTTTATGCAATTATACAGCTAGAAATTATACGGCATTGAACTATCACAATCGTTCCAAACATGGTTCCGAAGAAGACAAATTCAAATGCAAATTTTGTTCATACATGTGTTTGAAGAAATTTGACCTATTAACACATGTAAAAAAATCACATAAAGAACTTATTAAAACACTTAAAGCTGAGGCGAGATATAAAGCGGATGAAGGGGATGCTTCTAAGGACACTGCTACTACTAATGCTAACATAACGACTTCTTCTATATTTGTAACATTAGAAGATGGTGATAATTGCCTAAACGAAACAGAATACTCTTCCAGTGATGACAGCATTCCTTTGGCACAAAAAATCACTAAATCCCATACAAAGCCCTCAATAAAGACTGAAATGGATAAGGAACAATTTAGTGATGAAGAATTTATAAGGGATTTTCTAAACATTAAAAAAAGAAAGACTAAATCATCAGCGGCCAAACCATTAGCCAGACCATGCGATGAATGTGGTAATATTTACAAAAACAGCAAAGCTCTTTATGCCCATAAACGTCATGTACATATCAGTGAAGATAAATATAGCTTATGTCCACATTGTGGTAAAAAATACAAACGAAAAATCGATCTTAGGATACACATTGAAAAGACTCATATTCCCAAAAATATAATTGAAACTGCTAAACAACCAGCTAAAGTTAGAGAGAAACGTTTTATGTGTACAGAATGCTCCTACGTTTGTACCACACTAACCATCCTGAATATTCACATAAATCGCCATCACACTGGCGAAAAACCCTATGAATGTGATATTTGCTTTAAATCGTTTATTGTGCGGTACGACTTGAAAATTCATCGTTATTTACATACCGGAGAAAGGCCATACAAATGTCCGATTTGTTCGAAGGGTTTTCGAGACAATTCCCATATGAATAAACACAAACGAATACATAGCAGTGAACGGCCGTACAAGTGTAAAGATTGCGAAAAAAGTTTCACACAGTCGTATAATTTATCGGTGCACCGACGAACCCATCTGAAGGAGAAAAATCTGAATTGTGGAATTTGTGATAAAGTATTTGAAAATAGATCATTATTAAATATACATCTTATTAATGAACAGCATCATGATGGAGTTGTATAA
Protein Sequence: MNEKSVQKCRTCLKICNKMLPLNEHARGCSPKRTYGQLLTEHAKIDFTSDYERLMPQHLCALCCRELRSTNAFVLQAKYSYNELINLISKQLDCLQEKTIDLPTNGNELEKSLDIKIENYIDEYHAIERKVQDTTTDGVNIVITSTMLKSEVWEESTDNVKPIKKDDEMDIIDNDLNDLPQTCSTTSDNTIASHLNDTSEEPLESHIDAACPICGKIMSRRDNLLKHMRTQHDIEAPSTYLDKHKPEPKEVFACKICPDKYINKYTYLYHIKNKHGVDESMGKQKPKAKIFKCRLCNYTARNYTALNYHNRSKHGSEEDKFKCKFCSYMCLKKFDLLTHVKKSHKELIKTLKAEARYKADEGDASKDTATTNANITTSSIFVTLEDGDNCLNETEYSSSDDSIPLAQKITKSHTKPSIKTEMDKEQFSDEEFIRDFLNIKKRKTKSSAAKPLARPCDECGNIYKNSKALYAHKRHVHISEDKYSLCPHCGKKYKRKIDLRIHIEKTHIPKNIIETAKQPAKVREKRFMCTECSYVCTTLTILNIHINRHHTGEKPYECDICFKSFIVRYDLKIHRYLHTGERPYKCPICSKGFRDNSHMNKHKRIHSSERPYKCKDCEKSFTQSYNLSVHRRTHLKEKNLNCGICDKVFENRSLLNIHLINEQHHDGVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259171;
90% Identity: -
80% Identity: -