Basic Information

Insect: Aldrichina grahami
Gene Symbol: -
Assembly: None
Location: Contig17:4596924-4599810[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.6e-05 0.00066 19.5 1.5 3 23 215 236 214 236 0.98

2 11 0.0078 0.32 11.1 1.5 1 23 256 279 256 279 0.96

3 11 0.16 6.6 6.9 0.8 2 23 296 318 295 318 0.95

4 11 7.3 3e+02 1.7 5.6 1 23 325 348 325 348 0.95

5 11 0.0016 0.067 13.2 0.8 2 23 459 481 459 481 0.96

6 11 5.6e-06 0.00023 21.0 2.2 3 23 490 511 489 511 0.97

7 11 0.096 3.9 7.6 3.0 1 23 531 553 531 554 0.95

8 11 3.4e-05 0.0014 18.5 0.7 1 23 560 582 560 582 0.96

9 11 5.5e-07 2.3e-05 24.1 2.4 1 23 588 610 588 610 0.99

10 11 4.3e-09 1.8e-07 30.8 2.7 1 23 616 638 616 638 0.99

11 11 6.1e-05 0.0025 17.7 0.1 2 21 645 664 644 668 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.6e-05	0.00066	19.5	1.5	3	23	215	236	214	236	0.98
2	11	0.0078	0.32	11.1	1.5	1	23	256	279	256	279	0.96
3	11	0.16	6.6	6.9	0.8	2	23	296	318	295	318	0.95
4	11	7.3	3e+02	1.7	5.6	1	23	325	348	325	348	0.95
5	11	0.0016	0.067	13.2	0.8	2	23	459	481	459	481	0.96
6	11	5.6e-06	0.00023	21.0	2.2	3	23	490	511	489	511	0.97
7	11	0.096	3.9	7.6	3.0	1	23	531	553	531	554	0.95
8	11	3.4e-05	0.0014	18.5	0.7	1	23	560	582	560	582	0.96
9	11	5.5e-07	2.3e-05	24.1	2.4	1	23	588	610	588	610	0.99
10	11	4.3e-09	1.8e-07	30.8	2.7	1	23	616	638	616	638	0.99
11	11	6.1e-05	0.0025	17.7	0.1	2	21	645	664	644	668	0.89

Sequence Information

Coding Sequence: ATGAATGAAAATTCGGTACAAAAGTGTAGGGCATGCCTTAAGAACAGTACAAAAACTTTTCCTCTAACCAAACATGCGAGAGGATGTAGTCCAAAGAGGACCTACGGTCAACTGCTAAAGGAATATGCCAAAATTGAGTGCAACCCCGATTATGAGCGTCTCATGCCTAAATATTTATGTTTTTTATGTTGTCGTGAGTTGAGAAACACTTACGCCTTCATTCGTCAGGCCCAGTATTGTAATATTAAACTTGTAAATGTTATTTCTAAGCAACTGGACTGTCTGCAAGAAAAAACAATTGATTTGCCTCAAAATGAATTGGAAGTATCTATTGATATCAAAATGGAACAGGATATTGATGATAGCGATGCAATGGACATCAAATCCAGGGATGCTTTGACAGATGAATTCAGCATTAAAAGAACGAGTGTACTCTCAAAACCTGAAAAGTTGGAAGAATCAACAGACAATGAAGCCCAATTTCAAAATGAAGATAATGGGGAAATTGATGGGATTGATAATGACCAAAATTATTCAAATGATTTACCGCCAGAATGTTCTACGACGTCCGACAATACCAGGGCCTCACATTTAAATGATAATGCTGAGGAGGAGACTTCAGAATCTCAAACTGATGCAGCCTGCCCAATATGCAGTAAAATTATTTGCAGGCGTGATAATTTATTAAAACACATGCGTACACAACATGATATAGAAGCGCCTAGTACATATTTAGCCAAACGAAAACCTGAAACAAAAGAAGTGTTTGCGTGTAAAATATGTCCTGGTAAATACACAAATAAATACACGTATTTATATCATATAAAAAATAAACATGGTGTTGATGAAAGAAAAGGAAAACAAAAACCAAAGGATAAAATTATTAAATGTCGTTCATGCGATTATACAGCTAGAACTTATGCGGCATTGAACTATCACAATCGTTCCAAGCATGGCTCCGAAAAAGACAAATTCAAATGCAAATTTTGTTCGTACATGTGTTTGAAGAAATTTGACCTATTAACACATGTGAAAAATTCACATAAAGAACTGATAAAAACACTTAAAGCAGAGGCGGTTAATAAAGCGGATGAAGGGGATGCCTCAAAGGACACTGCTACTACTAATGCTAACTTAACGAATTCTTTTAAATTTGTAACAACACAAGATGGTGATAATTGCCTAAATGAATCAGAATATTCTTCCAGTGATGACAGCATTCCTTTGGCACAAAAAATCACTAAATATCATACAAAGCCCTCAATAAAGACTGAAATGTATAAGGAACAATTTAGTGATGAAGAGTTTATAAGGGATTTTCTGAACATAAAAAAAAGAAAGACTAAATCATCAGCGGCCAAATCATTAGCCAGACGATGCGATGAATGTGGTAATATTTACAAAAACTACAAAGCCCTGTATGCTCATCAACGTCATGTACATATCAGCGAAGATAAGTACAGTTTATGTCCACATTGTGGTAAAAAATACAAACGAAAAACCGATCTTAGGATACACATTGAAAAGACTCATATTCCCAAAAATACAACTGAAACTGCAAAACAACCGGCAAAAGTTAGAGAGAAACGATTTATGTGTACAGAATGCTCGTACGTTTGTACTACAATAACCATACTGAATATTCACATAAATCGTCATCATACTGGCGAAAAACCTTATAAATGTGATATTTGCTTTAAATCGTTTATTGTGCCGTACGACTTGAAAATTCATCGTTATTTACATACCGGCGAAAGGCCATACAAATGTCCGATTTGTTCGAAGGGTTTTCGAGACAATTCCCATATGATTAAACACAAACGTATACATAGCAGTGAACGGCCGTACAAGTGTAAAGATTGCGGTAAAAGTTTTACACAGTCGTATAATTTATCGGTGCACCGGCGAACGCATCTAAAGGAGAAAAAACTGAATTGTGCGATTTGTGGTAAAGTATTTGAAAATAGATCATTATTAAATATACATCGTATTAATGAAAATCATCATGATGAAGTAGCATGA
Protein Sequence: MNENSVQKCRACLKNSTKTFPLTKHARGCSPKRTYGQLLKEYAKIECNPDYERLMPKYLCFLCCRELRNTYAFIRQAQYCNIKLVNVISKQLDCLQEKTIDLPQNELEVSIDIKMEQDIDDSDAMDIKSRDALTDEFSIKRTSVLSKPEKLEESTDNEAQFQNEDNGEIDGIDNDQNYSNDLPPECSTTSDNTRASHLNDNAEEETSESQTDAACPICSKIICRRDNLLKHMRTQHDIEAPSTYLAKRKPETKEVFACKICPGKYTNKYTYLYHIKNKHGVDERKGKQKPKDKIIKCRSCDYTARTYAALNYHNRSKHGSEKDKFKCKFCSYMCLKKFDLLTHVKNSHKELIKTLKAEAVNKADEGDASKDTATTNANLTNSFKFVTTQDGDNCLNESEYSSSDDSIPLAQKITKYHTKPSIKTEMYKEQFSDEEFIRDFLNIKKRKTKSSAAKSLARRCDECGNIYKNYKALYAHQRHVHISEDKYSLCPHCGKKYKRKTDLRIHIEKTHIPKNTTETAKQPAKVREKRFMCTECSYVCTTITILNIHINRHHTGEKPYKCDICFKSFIVPYDLKIHRYLHTGERPYKCPICSKGFRDNSHMIKHKRIHSSERPYKCKDCGKSFTQSYNLSVHRRTHLKEKKLNCAICGKVFENRSLLNIHRINENHHDEVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00200080;
90% Identity: iTF_00259111; iTF_00259979;
80% Identity: -