Basic Information

Insect: Aldrichina grahami
Gene Symbol: -
Assembly: None
Location: Contig18:3255240-3264059[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.1e-05 0.0021 17.9 2.3 1 23 108 130 108 130 0.96

2 11 6.1e-06 0.00025 20.9 0.9 1 23 136 159 136 159 0.96

3 11 5.7e-05 0.0023 17.8 1.0 1 23 165 187 165 187 0.97

4 11 4e-05 0.0016 18.3 3.1 1 23 193 215 193 216 0.95

5 11 3.4e-07 1.4e-05 24.8 0.5 1 23 223 245 223 245 0.97

6 11 0.057 2.3 8.4 3.8 2 23 252 274 251 274 0.94

7 11 0.12 4.9 7.3 0.1 3 23 282 301 280 301 0.94

8 11 2.1e-07 8.6e-06 25.5 0.8 1 23 307 329 307 329 0.99

9 11 0.0066 0.27 11.3 5.2 1 23 335 357 335 357 0.99

10 11 0.11 4.6 7.4 0.9 2 23 364 389 363 389 0.84

11 11 0.0012 0.048 13.7 0.3 1 21 395 415 395 416 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.1e-05	0.0021	17.9	2.3	1	23	108	130	108	130	0.96
2	11	6.1e-06	0.00025	20.9	0.9	1	23	136	159	136	159	0.96
3	11	5.7e-05	0.0023	17.8	1.0	1	23	165	187	165	187	0.97
4	11	4e-05	0.0016	18.3	3.1	1	23	193	215	193	216	0.95
5	11	3.4e-07	1.4e-05	24.8	0.5	1	23	223	245	223	245	0.97
6	11	0.057	2.3	8.4	3.8	2	23	252	274	251	274	0.94
7	11	0.12	4.9	7.3	0.1	3	23	282	301	280	301	0.94
8	11	2.1e-07	8.6e-06	25.5	0.8	1	23	307	329	307	329	0.99
9	11	0.0066	0.27	11.3	5.2	1	23	335	357	335	357	0.99
10	11	0.11	4.6	7.4	0.9	2	23	364	389	363	389	0.84
11	11	0.0012	0.048	13.7	0.3	1	21	395	415	395	416	0.95

Sequence Information

Coding Sequence: ATGGTACGCAGTCGTCGCTCTATATCCAAAGAAGATGCTTCATCGGTGTTGGCCGACAGTGGCATCTCATTGTCTTCACCCCCCGCCAACCGTAAACACTTTCCTCAGCTCAACGAAGACGAAGAAGAAGCCTTATTGGGCAAACTATGTGTGACAGATGATGAAGCGGAACCCGAAATTATCGAAGTAAATAACATAGAAAAAGTTGTTATCAGTGATAATGATATAGATGACAACGACGACACCGAAGAACAGTCTGAGGATTCGGAAAAATGTAAGGTATATCCCACACAGCCTGGTGCTAAACGGGCTCGTAAGACCTACATCTGTGCCACTTGTCACAAAGAGTTTCGTGGCAAATCGGATTTAACACGACACACGTTTGTACACACAAACGAAAAGCCCTTTACATGTGAGACATGTAATAAGAGCTATCGCCAAGAAATCAACTTGAAAAATCATATAACATCGGCCCATAAGAGGGAGAAAGAATTTGCCTGCAAACAGTGCCCCAAAAAGTTTGCTCTTAAGGAGAGATTACGACTGCATATGCGTTTGCATACGGGAGAAAAGCCTTATGCGTGCAAGCAATGTGATAAACGTTTTGCCAGGGGTGGACAGTTACACCAGCACATGGTCACCCATCATCATGATGCTCCCAAACAATTTAAATGTGAAATATGTTCTGAGCGCTTTTCCACATCCTCCAATTTGAAGGCCCATGTGCAGGGTCATGAAGAAACGCCCGATTGCTTTTGTGAAATATGTAAAGAACATTTCGCCAATGATGTGCTGCTCAAGGCCCATGTCCATAAATTGCATTACAAACTCAAGCAACTGGATTGTGATATTTGTAAAAAACCCATCGAAGAAAACGATTTGCTAAGTCATATGAAAACACACAGTAATGTCAAGACTTATGTGTGTGAAATCTGCAATTCGGTGTTTACCCAAAAGTCTCAATTTAATGTACATATGCGTATGCACACGGGAGAAAGGCCCTTTCAATGCAGAATTTGCTGTCAAACATTTGCCCATTCCAGCGTTTTGAAACTACACATACGCAAACACACGGGCGAGAAGCCCTTCAATTGTTTGCTGTGCAAAGACGATGAAGTGGCCTTCTCACAACTGGCCCATATGAAAACTCATATGAAGAAGATACACAAACAACTAAAACCCTACATGTGTGAAGGTTGTAAAACTTTCTTTAAAGTAAAAATTGATCTAGAGACACACCAGCTTAAATGTAGAAAGTATACCACTACACCAGAAGAGCAGGATGCCCAATATAATGAAACACAAACCTTATCACACATACGTTTCCTGATGGCCATATTGCTGAAGAAAATCTCTTCGGATCAAAAACTACAACAACTGGGCTTTGAGAAACGTTTAATCGATAATGTAGTTATAGCTGCCTTAAAATTGGCCAATCGTAAGGCCCATGATGATTCGAAATTGTCATGTTTGGAAAGAATGCGCTTAAATGTGGAAGAATTCCTCAATTGGATTGTGCCCGCCAAAGTAATGGAAAAGTTTCGCGAAGAAAACCAAACAACAGATAATATTTTGGAAAAGATAGTTTCCATGTACATGAAACAAAAGTAA
Protein Sequence: MVRSRRSISKEDASSVLADSGISLSSPPANRKHFPQLNEDEEEALLGKLCVTDDEAEPEIIEVNNIEKVVISDNDIDDNDDTEEQSEDSEKCKVYPTQPGAKRARKTYICATCHKEFRGKSDLTRHTFVHTNEKPFTCETCNKSYRQEINLKNHITSAHKREKEFACKQCPKKFALKERLRLHMRLHTGEKPYACKQCDKRFARGGQLHQHMVTHHHDAPKQFKCEICSERFSTSSNLKAHVQGHEETPDCFCEICKEHFANDVLLKAHVHKLHYKLKQLDCDICKKPIEENDLLSHMKTHSNVKTYVCEICNSVFTQKSQFNVHMRMHTGERPFQCRICCQTFAHSSVLKLHIRKHTGEKPFNCLLCKDDEVAFSQLAHMKTHMKKIHKQLKPYMCEGCKTFFKVKIDLETHQLKCRKYTTTPEEQDAQYNETQTLSHIRFLMAILLKKISSDQKLQQLGFEKRLIDNVVIAALKLANRKAHDDSKLSCLERMRLNVEEFLNWIVPAKVMEKFREENQTTDNILEKIVSMYMKQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01314024;
90% Identity: iTF_00259982;
80% Identity: -